CK934502

Overview
NameCK934502
Unique NameCK934502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934502 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.533e-74
Identity = 138/193 (71.50%), Postives = 159/193 (82.38%), Query Frame = 2
Query:  284 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 862
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNK 193          
BLAST of CK934502 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.694e-73
Identity = 134/166 (80.72%), Postives = 146/166 (87.95%), Query Frame = 2
Query:  368 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKD 865
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKD
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKD 166          
BLAST of CK934502 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.066e-59
Identity = 114/147 (77.55%), Postives = 126/147 (85.71%), Query Frame = 2
Query:  425 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKD 865
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKD
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKD 146          
BLAST of CK934502 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.495e-45
Identity = 91/113 (80.53%), Postives = 97/113 (85.84%), Query Frame = 2
Query:  527 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKD 865
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKD
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKD 113          
BLAST of CK934502 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.033e-22
Identity = 73/279 (26.16%), Postives = 136/279 (48.75%), Query Frame = 2
Query:    5 TLTKHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVG 841
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEG 3025          
The following BLAST results are available for this feature:
BLAST of CK934502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY1.533e-7471.50Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA1.694e-7380.72Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.066e-5977.55Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO1.495e-4580.53Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI3.033e-2226.16Probable polyketide synthase 1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934502 ID=CK934502; Name=CK934502; organism=Citrus sinensis; type=EST; length=865bp
GGGGACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCAAC
TTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGC
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAA
CATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATCG
GCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTC
GCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACAA
GGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTTCC
GCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTTC
GGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGACACGTCGGT
CGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTG
ACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTC
CATTTGCTTAAAGAC
back to top