CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G +VP PV  +++  LG +    I R  Y  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH +
Sbjct:  537 IKVRGVDVPKPVQKWSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEG-----PIGLIMTPTRELATQIHKD 641          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G +VP PV  +++  LG +    I R  Y  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ +    G     P+ LI+ PTREL++QIH +
Sbjct:  545 IKVRGVDVPKPVQKWSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLDNMEG-----PIGLIMTPTRELATQIHKD 649          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  +   G  +P P+  + E  +  ++   I    Y +P+P+QR AIPI +  RDL+  A+TGSGKTAAF  P++  I     +      R + P ALI+APTREL+ QI  E
Sbjct:  299 EDFSIAARGGGIPHPLRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDN--RHLGPYALIMAPTRELAQQIETE 410          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G NVP PV TF E      +   +++  +  PTP+Q+ A P++++GRD++  + TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQQE 214          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            +  SG+NVP P+  F E+         L  N+ +  + +PTP+QR AIPI ++GR+  ACA TGSGKT AF FPI+  I       +P     V   A+IL PTREL++Q
Sbjct:  130 IHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKI-------KPGSKEGV--KAVILCPTRELAAQ 230          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_KLULA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Kluyveromyces lactis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ++ SG++ P PV  ++++ L  E+ +L     ++V  TP+Q  AIP  ++GRD++  ++TGSGKT AF  P++    R+   Q P       P+ LIL PTREL+ QI +EA
Sbjct:  233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLV----RQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEA 340          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++ SG+NVP PV  +++  L   +   +    Y KPT +Q  A+P+ ++GRD++  A+TGSGKT AF  P++  I  +  V    GA     +ALI+ PTREL +QI+ +
Sbjct:  417 IKVSGKNVPKPVQKWSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVTGDDGA-----IALIMTPTRELCTQIYSD 521          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            AE    EA +  +  D      ++  G +VP PV  +++  LG +    I++  Y  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH +
Sbjct:  546 AEMTDEEAASLRLELDG-----IKVRGVDVPKPVMKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEG-----PIGLIMTPTRELATQIHKD 667          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_SCLS1 (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G  +P P+ +++E  L + L   I +  Y +P+ VQR AIPI++  RDL+  A TGSGKTAAF  P++  +   +        +   P A+ILAPTREL+ QI  EA
Sbjct:  363 EDFNISTKGGAIPNPMRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEA 475          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G ++P P+ TF ++D   ++N     NI    +  PTP+Q  AIP+ + GR+L+A A TGSGKT AF  PI+  + +       +G R     ALI++PTREL+SQIH E
Sbjct:  149 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PANKGFR-----ALIISPTRELASQIHRE 253          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
PRP5_ASPTN2.395e-1438.18Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_ASPCL2.395e-1438.18Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_CRYNE2.395e-1439.47Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP2_SCHPO2.395e-1438.68ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
RH57_ORYSJ3.128e-1442.73DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sa... [more]
PRP5_KLULA3.128e-1438.39Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_CHAGB3.128e-1438.18Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_ASPFU3.128e-1434.85Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_SCLS13.128e-1440.87Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX52_HUMAN3.128e-1440.35Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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