CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ G +VP PV +++ LG + I R Y PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH + Sbjct: 537 IKVRGVDVPKPVQKWSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEG-----PIGLIMTPTRELATQIHKD 641
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ G +VP PV +++ LG + I R Y PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ + G P+ LI+ PTREL++QIH + Sbjct: 545 IKVRGVDVPKPVQKWSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLDNMEG-----PIGLIMTPTRELATQIHKD 649
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + G +P P+ + E + ++ I Y +P+P+QR AIPI + RDL+ A+TGSGKTAAF P++ I + R + P ALI+APTREL+ QI E Sbjct: 299 EDFSIAARGGGIPHPLRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDN--RHLGPYALIMAPTRELAQQIETE 410
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G NVP PV TF E + +++ + PTP+Q+ A P++++GRD++ + TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQQE 214
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864 + SG+NVP P+ F E+ L N+ + + +PTP+QR AIPI ++GR+ ACA TGSGKT AF FPI+ I +P V A+IL PTREL++Q Sbjct: 130 IHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKI-------KPGSKEGV--KAVILCPTRELAAQ 230
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_KLULA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Kluyveromyces lactis GN=PRP5 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ++ SG++ P PV ++++ L E+ +L ++V TP+Q AIP ++GRD++ ++TGSGKT AF P++ R+ Q P P+ LIL PTREL+ QI +EA Sbjct: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLV----RQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEA 340
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ SG+NVP PV +++ L + + Y KPT +Q A+P+ ++GRD++ A+TGSGKT AF P++ I + V GA +ALI+ PTREL +QI+ + Sbjct: 417 IKVSGKNVPKPVQKWSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVTGDDGA-----IALIMTPTRELCTQIYSD 521
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 AE EA + + D ++ G +VP PV +++ LG + I++ Y PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH + Sbjct: 546 AEMTDEEAASLRLELDG-----IKVRGVDVPKPVMKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEG-----PIGLIMTPTRELATQIHKD 667
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_SCLS1 (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +P P+ +++E L + L I + Y +P+ VQR AIPI++ RDL+ A TGSGKTAAF P++ + + + P A+ILAPTREL+ QI EA Sbjct: 363 EDFNISTKGGAIPNPMRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEA 475
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + G ++P P+ TF ++D ++N NI + PTP+Q AIP+ + GR+L+A A TGSGKT AF PI+ + + +G R ALI++PTREL+SQIH E Sbjct: 149 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PANKGFR-----ALIISPTRELASQIHRE 253 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |