CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  460 PFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            PF  +   E P   A  +      Y +    T    VP P+  F+E+ L + +   IRR  Y  PT +Q    PI+++G + +  A+TGSGKT  +  P I  I  +Q +QR  G     P+AL+LAPTREL+ QI   A
Sbjct:  241 PFKKNFYQEHPNV-ANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDG-----PIALVLAPTRELAQQIQQVA 374          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            +EAE+      A ++   +TSGE  P P  +F E+ + ++L        Y  PTP+Q  AIP+++ GRD++  A+TGSGKTAAF  P++  +M           +T++   L+LAPTREL+ QI
Sbjct:   20 SEAESVSSRGSAKDE--TQTSGEE-PAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALM--------EAPQTLF--GLVLAPTRELAYQI 130          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  448 REVNPFGDDIDAEQPFAEA--ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            R + PF  +   E P  +A  +     +    DI VE  G +VP PV  F E +  +     I +  +V+PTP+Q    P+++ GRD++  AQTGSGKT ++  P +  +  +  +++  G     P+ LILAPTREL+ QI  E+
Sbjct:  206 RSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVE--GHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG-----PIVLILAPTRELAVQIQQES 344          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            +  SG  VPPP+ +F       EL   +    +  PTP+Q  + PI++ GRD++A A+TGSGKT  +  P   G +   ++QR R    + P  L+L+PTREL++QI +EA
Sbjct:  146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP---GFL---HLQRIRNDSRMGPTILVLSPTRELATQIQEEA 250          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRR-CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            V   G+NVPPP  T+ ++ + E +   I+    + KP+P+Q  AIPI ++GRD++  A+TGSGKT ++  P++  I  + + +   G     P+ L+L+PTREL+ QI  E
Sbjct:  375 VRARGKNVPPPFLTWGQLLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEG-----PIGLVLSPTRELALQIEKE 480          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_GIBZE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae GN=PRP5 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++ +G++VP PV  +A+  L  +    +    Y KPTP+Q  A+P  ++GRD++  A+TGSGKT AF  P+   I  +  ++   G     P+ LI+ PTREL+ QIH +
Sbjct:  585 IKVNGKDVPKPVQKWAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHIKDQPPLKDTDG-----PIGLIMTPTRELAVQIHKD 689          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_BOTFB (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) GN=prp28 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G  +P P+  ++E  L + L   I +  Y +P+ VQR AIPI++  RDL+  A TGSGKTAAF  P++  +   +        +   P A+ILAPTREL+ QI  EA
Sbjct:  364 EDFNISTKGGAIPNPMRNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEA 476          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 39/97 (40.21%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYV-QRPRGARTVYPLALILAPTRELSSQIHD 873
            TF++ +L   L   I +C++ KPT VQ   IP+++ G+DL+A A+TGSGKTAA+  PI+  +++++ + +  RG       AL+L PTREL+ Q+++
Sbjct:   15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGI-----FALLLVPTRELAQQVYN 106          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQIHDE 876
            D E P  E +    +    +    + +GE++P P+ +F ++     L  +L  N+   ++V+PT +Q  ++PIS++GRDL+ACA TGSGKT AF  P+I  ++        +G    Y +  L+++PT EL+ QI  E
Sbjct:   81 DEEAPPLEIQTVEDSIKLRKANHSKVTGEDIPLPIGSFQDMIGRFRLDSKLLSNLLEAEFVEPTAIQCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLVSS-----KGRPKNYGITGLVISPTNELAIQIFQE 213          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + +G+++P P+ +F ++     + + +  N+   ++V+PTP+Q  AIPI++A RDL+ACA TGSGKT AF  P++  ++  Q V +  G R      LI++PT EL+ QI  +
Sbjct:  105 KVTGDDIPIPIGSFQDMIGRFKIDKRVLSNLLDAEFVEPTPIQCEAIPITLANRDLIACAPTGSGKTLAFLIPLLQQLV-SQNVLKNHGIR-----GLIISPTNELAVQIFQQ 211          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX17_DROME3.128e-1435.71ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]
RRP3_EMENI4.086e-1437.90ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
RH30_ORYSJ4.086e-1434.25DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
RH14_ARATH4.086e-1438.74DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
PRP5_LODEL4.086e-1437.84Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_GIBZE4.086e-1437.27Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_BOTFB4.086e-1440.87Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DBP9_SCHPO4.086e-1440.21ATP-dependent RNA helicase dbp9 OS=Schizosaccharom... [more]
ROK1_PICST5.336e-1433.33ATP-dependent RNA helicase ROK1 OS=Pichia stipitis... [more]
ROK1_LODEL5.336e-1437.17ATP-dependent RNA helicase ROK1 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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