CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +FA   L + +  NI +  Y +PTP+QR  IP+ + GRD++  A+TGSGKTAAF  P+I  +   Q    P G R     A+IL+P+REL+ Q + +
Sbjct:  100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQ----PGGVR-----AVILSPSRELALQTYKQ 187          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR----EQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            A+   AE     ++ D      ++  G++ P P++ + ++ L       +   +Y KPT +Q  AIP  ++GRD+++ A+TGSGKT AF  P++  I      E +     GA + +PL +I+ PTREL  QI+
Sbjct:  349 ADMTEAETNELRLSLDG-----IKIRGKDCPKPISKWTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASS-HPLGVIITPTRELCVQIY 476          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  469 DDIDAEQPF-AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            +D DAE    AE +     F A E+   E + E       +F E +L   +   +    +  PTP+QR  IP+++ G+D++  A TGSGKTAAF  PI+     E+ + RPR   T      IL PTREL+ Q ++ A
Sbjct:  268 NDSDAESEIDAEEQEKRKAFFAPEE---EKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL-----ERLLFRPRKVPT--SRVAILMPTRELAVQCYNVA 395          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            G+ +PPP+ +F E+     +   +++     PTP+Q   IP  ++GRD++  A TGSGKT  F  P+I   + ++  +R   ++   P  LI+ P+REL+ Q H
Sbjct:  173 GDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE--KRLPFSKREGPYGLIICPSRELARQTH 274          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 39/116 (33.62%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEID--LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E+  +   G++ PPP+++F  +   +   L   +    +  PTPVQ  + P+ ++GRDL+  A+TGSGKT  F  P ++ I  ++ ++   G     P+ ++LAPTREL+ QI +E
Sbjct:   84 EEHVITIFGDDCPPPMSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDG-----PMVVVLAPTRELAQQIEEE 194          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_MAGGR (ATP-dependent RNA helicase DBP4 OS=Magnaporthe grisea GN=DBP4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            FAE+ L E     +R   +   T +Q  AIP+++ GRD++  A+TGSGKT AF  P++  + REQ+ Q  +        AL+L+PTREL+ Q
Sbjct:   51 FAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEAKLG------ALVLSPTRELAVQ 136          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_DEBHA (ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            DAY+ +  E S       ++ F+++ + EE    ++   +   T +Q+  IPIS+ G D+M  A+TGSGKT AF  P I  ++R +  +    A      ALI++PTREL+ QI +
Sbjct:   34 DAYDPVVDEKS-------ISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIESLIRNKITEYDGLA------ALIISPTRELAVQIFE 136          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_CANGA (ATP-dependent RNA helicase DBP3 OS=Candida glabrata GN=DBP3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 43/136 (31.62%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            G  ++ E+   + ++    F    ++ VE   +    P+  F +I L +E+   I   K+ KPTP+Q  + P  ++G+D++  A+TGSGKT AF  P I+ ++      +P+G +      L+++PTREL+SQI+D
Sbjct:   91 GAYVENEELSKQPQSVIDEFFKENEVSVEDPSKLNLRPLLAFNQISLDKEVQNEI--AKFPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINNLLTSS--SKPKGIK-----VLVISPTRELASQIYD 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +G ++P P+ +F E    + +   ++   + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  104 TGHDIPKPITSFDEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQKE 205          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEIDLGEELNL-NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            + +G N   P+  F E  L E L   NI  C     T +QR+AIP   + RDL+ACA TGSGKT A+ FPI+  +     +  P G R     A+I+APTREL  QI+ +A
Sbjct:   39 KVTGNNPVDPIEEFPEGILCENLKKQNITEC-----TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ----LHVPGGYR-----AIIVAPTRELCEQIYRQA 135          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DBP10_CANAL1.113e-1141.24ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
PRP5_YARLI1.453e-1132.09Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DRS1_ASPTN1.453e-1135.51ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DDX41_HUMAN1.453e-1133.65Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
DDX17_TRYBB1.453e-1133.62Putative DEAD-box RNA helicase HEL64 OS=Trypanosom... [more]
DBP4_MAGGR1.453e-1140.22ATP-dependent RNA helicase DBP4 OS=Magnaporthe gri... [more]
DBP4_DEBHA1.453e-1134.48ATP-dependent RNA helicase DBP4 OS=Debaryomyces ha... [more]
DBP3_CANGA1.453e-1131.62ATP-dependent RNA helicase DBP3 OS=Candida glabrat... [more]
DBP2_VANPO1.453e-1134.58ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma... [more]
ROK1_SCHPO1.898e-1142.34ATP-dependent RNA helicase rok1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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