CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15 Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 + + + G++V P+ F E LN N+++ Y PTP+Q IP+ + GRD++A A TGSGKTAAF P+I E P ALIL PTREL+ QI +A Sbjct: 187 QQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT----------PSALILTPTRELAIQIERQA 291
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15 Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 + + + G+ V P+ F L E LN N+++ Y PTP+Q IP+ + GRD++A A TGSGKTAAF P+I + E P ALIL PTREL+ QI +A Sbjct: 187 QQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT----------PSALILTPTRELAIQIERQA 291
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CANAL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans GN=PRP28 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G+N+P P+ + E + ++L I + Y +PT VQR +IP+++ RD++ A+TGSGKT AF P+++ I+ E Y++ + + P+ LILAPTREL+ QI EA Sbjct: 152 EDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNE--PVGLILAPTRELALQITKEA 266
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15 Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 454 VNPFGDDIDAEQPFAEAENTGINFDAYEDI-PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 + PF + E P A A T + Y + + G+++P PV +F ++ + + +++ + +PTP+Q P+++ GRDL+ A+TGSGKT ++ P I + + + G P+ L+LAPTREL+ QI EA Sbjct: 56 LTPFEKNFYVESP-AVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDG-----PIVLVLAPTRELAVQIQQEA 192
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_NEUCR (Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa GN=prp-5 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15 Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ SG+N+P PV +++ L + I + KPTP+Q A+P+ ++GRD++ A+TGSGKT AF P++ + + V GA +ALI+ PTREL +QI+ + Sbjct: 549 IKVSGKNIPKPVQKWSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGA-----IALIMTPTRELCTQIYSD 653
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15 Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYV--QRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + + G ++ P+ +AE L +L N+ I+ Y PTP+QR +IP+++ GRD++ A+TGSGKT AF P+ S I+ Y+ + + + PL LILAPTREL+ QI EA Sbjct: 138 EDYNITSKGGDIENPLRCWAESKLPAKLLNILIKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEA 257
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata GN=ROK1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15 Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 +GE++P P+ +F ++ L + L N+ + +PTP+Q AIP+ + GRDL+ACA TGSGKT AF P++ I+ E+ +G LI++PT+EL++QI +E Sbjct: 111 TGEDIPLPIGSFEDLISRFSLDKRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKG--------LIISPTKELATQIFNE 213
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15 Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ G +VP PV +++ LG + IR+ Y +PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH E Sbjct: 547 IKVRGVDVPKPVQKWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEG-----PVGLIMTPTRELATQIHKE 651
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15 Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + G+ P P+ T+ + + ++ +++ Y KPTP+Q AIP ++GRDL+ A+TGSGKT AF P+ I+ ++ V G PLA+I+ PTREL+ QI E Sbjct: 328 ISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEG-----PLAVIMTPTRELALQITKE 432
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15 Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 +++ ++ G++VP P+ T+ + L +L I++ + KP P+Q A+PI ++GRD + A+TGSGKT AF P++ + + V G P+ LI+APTREL QIH + Sbjct: 269 KNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDG-----PIGLIMAPTRELVVQIHSD 377 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |