CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            + + +   G++V  P+  F      E LN N+++  Y  PTP+Q   IP+ + GRD++A A TGSGKTAAF  P+I     E             P ALIL PTREL+ QI  +A
Sbjct:  187 QQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT----------PSALILTPTRELAIQIERQA 291          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            + + +   G+ V  P+  F    L E LN N+++  Y  PTP+Q   IP+ + GRD++A A TGSGKTAAF  P+I   + E             P ALIL PTREL+ QI  +A
Sbjct:  187 QQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT----------PSALILTPTRELAIQIERQA 291          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CANAL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G+N+P P+  + E  + ++L   I +  Y +PT VQR +IP+++  RD++  A+TGSGKT AF  P+++ I+   E Y++  + +    P+ LILAPTREL+ QI  EA
Sbjct:  152 EDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNE--PVGLILAPTRELALQITKEA 266          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  454 VNPFGDDIDAEQPFAEAENTGINFDAYEDI-PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            + PF  +   E P A A  T    + Y  +  +   G+++P PV +F ++   + +   +++  + +PTP+Q    P+++ GRDL+  A+TGSGKT ++  P I  +  +  +    G     P+ L+LAPTREL+ QI  EA
Sbjct:   56 LTPFEKNFYVESP-AVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDG-----PIVLVLAPTRELAVQIQQEA 192          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_NEUCR (Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa GN=prp-5 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++ SG+N+P PV  +++  L   +   I    + KPTP+Q  A+P+ ++GRD++  A+TGSGKT AF  P++  +  +  V    GA     +ALI+ PTREL +QI+ +
Sbjct:  549 IKVSGKNIPKPVQKWSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGA-----IALIMTPTRELCTQIYSD 653          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYV--QRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + + G ++  P+  +AE  L  +L N+ I+   Y  PTP+QR +IP+++ GRD++  A+TGSGKT AF  P+ S I+     Y+  +  + +    PL LILAPTREL+ QI  EA
Sbjct:  138 EDYNITSKGGDIENPLRCWAESKLPAKLLNILIKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEA 257          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata GN=ROK1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +GE++P P+ +F ++     L + L  N+    + +PTP+Q  AIP+ + GRDL+ACA TGSGKT AF  P++  I+ E+     +G        LI++PT+EL++QI +E
Sbjct:  111 TGEDIPLPIGSFEDLISRFSLDKRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKG--------LIISPTKELATQIFNE 213          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G +VP PV  +++  LG +    IR+  Y +PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH E
Sbjct:  547 IKVRGVDVPKPVQKWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEG-----PVGLIMTPTRELATQIHKE 651          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G+  P P+ T+ +  +  ++   +++  Y KPTP+Q  AIP  ++GRDL+  A+TGSGKT AF  P+   I+ ++ V    G     PLA+I+ PTREL+ QI  E
Sbjct:  328 ISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEG-----PLAVIMTPTRELALQITKE 432          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +++ ++  G++VP P+ T+ +  L  +L   I++  + KP P+Q  A+PI ++GRD +  A+TGSGKT AF  P++  +  +  V    G     P+ LI+APTREL  QIH +
Sbjct:  269 KNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDG-----PIGLIMAPTRELVVQIHSD 377          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX59_MOUSE1.270e-1539.13Probable ATP-dependent RNA helicase DDX59 OS=Mus m... [more]
DDX59_HUMAN1.270e-1540.00Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
PRP28_CANAL1.659e-1540.17Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
RH20_ARATH2.830e-1531.47DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
PRP5_NEUCR3.695e-1537.27Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_DEBHA3.695e-1540.83Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
ROK1_CANGA4.826e-1538.74ATP-dependent RNA helicase ROK1 OS=Candida glabrat... [more]
PRP5_COCIM4.826e-1539.09Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX46_DANRE4.826e-1538.18Probable ATP-dependent RNA helicase DDX46 OS=Danio... [more]
RH45_ORYSJ6.303e-1536.84DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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