CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14 Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + + ++ G++VP P+ T+ + L +L I++ + KP +Q A+PI ++GRD + A+TGSGKT AF P++ + + V G P+ LI+APTREL QIH + Sbjct: 408 KQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDG-----PIGLIMAPTRELVVQIHSD 516
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14 Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 1 Query: 463 FGDDIDAEQPFAEA--ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 F + E P +A E + DI VE G +VP P+ F + + + + I + + +PTP+Q P+++ GRDL+ A+TGSGKT A+ P + + + PR + P+ LILAPTREL+ QI +E+ Sbjct: 125 FEKNFYVESPTVQAMTEQDVAMYRTERDISVE--GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ-----PRLGQDDGPIVLILAPTRELAVQIQEES 258
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14 Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + G+++P P+ + E L E+ +++ Y +P+ +QR AIP+ + +DL+ A+TGSGKTAAF P+I I + + + P A++LAPTREL+ QI E Sbjct: 233 EDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESN--MHLGPYAVVLAPTRELAQQIQVE 344
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + G ++P P+ TF ++D ++N NI + PTP+Q AIP+ + GR+L+A A TGSGKT AF PI+ + + +G R AL+++PTREL+SQIH E Sbjct: 150 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PTNKGFR-----ALVISPTRELASQIHRE 254
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 G + D+E+ + + + + + N +F+E++L EL + Y KPTP+Q AIP ++ G D++ AQTGSGKTAAF PI++ + +Q A ILAPTREL+ QI + Sbjct: 42 GSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY----------YACILAPTRELAQQIKE 167
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 G + D+E+ + + + + + N +F+E++L EL + Y KPTP+Q AIP ++ G D++ AQTGSGKTAAF PI++ + +Q A ILAPTREL+ QI + Sbjct: 42 GSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY----------YACILAPTRELAQQIKE 167
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 38/114 (33.33%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 +++ ++ G++VP P+ + + L ++ +++ Y KP P+Q A+PI ++GRD + A+TGSGKT F P++ I + V+ G P+ L++APTREL QI+ + Sbjct: 380 KELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG-----PIGLVMAPTRELVQQIYSD 488
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_BOTFB (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 AE AE + + D ++ +G++VP PV +++ L + I + Y +PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH E Sbjct: 525 AEMTEAEIADLRLELDG-----IKVAGKDVPKPVQKWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKGSDG-----PIGLIMTPTRELATQIHKE 646
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ G VP PV+ +++ LG + I R Y PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH + Sbjct: 542 IKVRGVEVPRPVSKWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRPLENMEG-----PVGLIMTPTRELATQIHKD 646
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_AJECN (ATP-dependent RNA helicase MAK5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MAK5 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 46/123 (37.40%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 511 TGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIM---REQYVQ-RPRGARTVYPLALILAPTRELSSQI 867 +GI+F+A E+ E G+ V V+ + + + E+ ++ + ++ KPTP+Q IP+ +G D++ A TGSGKT AF PI+ + RE+ VQ + YP+ALIL+PTREL+ Q+ Sbjct: 168 SGISFEALEE---EVDGDEVD--VSGWDPLGISAEIQTSLSKLRFAKPTPIQTACIPLIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQL 285 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |