CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + + ++  G++VP P+ T+ +  L  +L   I++  + KP  +Q  A+PI ++GRD +  A+TGSGKT AF  P++  +  +  V    G     P+ LI+APTREL  QIH +
Sbjct:  408 KQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDG-----PIGLIMAPTRELVVQIHSD 516          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  463 FGDDIDAEQPFAEA--ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            F  +   E P  +A  E     +    DI VE  G +VP P+  F + +  + +   I +  + +PTP+Q    P+++ GRDL+  A+TGSGKT A+  P +  +  +     PR  +   P+ LILAPTREL+ QI +E+
Sbjct:  125 FEKNFYVESPTVQAMTEQDVAMYRTERDISVE--GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ-----PRLGQDDGPIVLILAPTRELAVQIQEES 258          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  +   G+++P P+  + E  L  E+   +++  Y +P+ +QR AIP+ +  +DL+  A+TGSGKTAAF  P+I  I +   +        + P A++LAPTREL+ QI  E
Sbjct:  233 EDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESN--MHLGPYAVVLAPTRELAQQIQVE 344          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G ++P P+ TF ++D   ++N     NI    +  PTP+Q  AIP+ + GR+L+A A TGSGKT AF  PI+  + +       +G R     AL+++PTREL+SQIH E
Sbjct:  150 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PTNKGFR-----ALVISPTRELASQIHRE 254          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            G + D+E+     +   +   +   +  +    N      +F+E++L  EL    +   Y KPTP+Q  AIP ++ G D++  AQTGSGKTAAF  PI++ +  +Q              A ILAPTREL+ QI +
Sbjct:   42 GSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY----------YACILAPTRELAQQIKE 167          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            G + D+E+     +   +   +   +  +    N      +F+E++L  EL    +   Y KPTP+Q  AIP ++ G D++  AQTGSGKTAAF  PI++ +  +Q              A ILAPTREL+ QI +
Sbjct:   42 GSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY----------YACILAPTRELAQQIKE 167          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 38/114 (33.33%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +++ ++  G++VP P+  + +  L  ++   +++  Y KP P+Q  A+PI ++GRD +  A+TGSGKT  F  P++  I  +  V+   G     P+ L++APTREL  QI+ +
Sbjct:  380 KELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG-----PIGLVMAPTRELVQQIYSD 488          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_BOTFB (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            AE   AE  +  +  D      ++ +G++VP PV  +++  L  +    I +  Y +PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH E
Sbjct:  525 AEMTEAEIADLRLELDG-----IKVAGKDVPKPVQKWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKGSDG-----PIGLIMTPTRELATQIHKE 646          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G  VP PV+ +++  LG +    I R  Y  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH +
Sbjct:  542 IKVRGVEVPRPVSKWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRPLENMEG-----PVGLIMTPTRELATQIHKD 646          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_AJECN (ATP-dependent RNA helicase MAK5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MAK5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 46/123 (37.40%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  511 TGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIM---REQYVQ-RPRGARTVYPLALILAPTRELSSQI 867
            +GI+F+A E+   E  G+ V   V+ +  + +  E+  ++ + ++ KPTP+Q   IP+  +G D++  A TGSGKT AF  PI+   +   RE+ VQ       + YP+ALIL+PTREL+ Q+
Sbjct:  168 SGISFEALEE---EVDGDEVD--VSGWDPLGISAEIQTSLSKLRFAKPTPIQTACIPLIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQL 285          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RH42_ORYSJ5.336e-1435.96DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
RH30_ARATH5.336e-1434.04DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
PRP28_SCHPO5.336e-1436.84Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX52_MOUSE5.336e-1439.47Probable ATP-dependent RNA helicase DDX52 OS=Mus m... [more]
RRP3_YEAST6.969e-1433.09ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RRP3_YEAS76.969e-1433.09ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RH45_ARATH6.969e-1433.33DEAD-box ATP-dependent RNA helicase 45 OS=Arabidop... [more]
PRP5_BOTFB6.969e-1434.85Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_ASPOR6.969e-1438.18Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
MAK5_AJECN6.969e-1437.40ATP-dependent RNA helicase MAK5 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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