CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G ++P P+ +F E    + +   +++  + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  117 GTDIPKPITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDG-----PIVLVLAPTRELAVQIQQE 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 50/140 (35.71%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  448 REVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            RE     D  D+E   + +E+   N    E  P E   +       +F E+ L E+L        Y  PT +Q  AIP+++ GRDL+  A+TGSGKTAAF  PI+  +M      +P          L+LAPTREL+ QI
Sbjct:   11 REAPQQEDHSDSEAHSSASEDAAPNTTEQEQEPSEAPKQ----APKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALM-----DKPSSF-----FGLVLAPTRELAYQI 136          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 48/134 (35.82%), Postives = 66/134 (49.25%), Query Frame = 1
Query:  472 DIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D D E    E E       A    P   S E      +TF  + L   +   +    Y KP+P+Q   IPI ++G+D++A A TGSGKTAAF  PII     E+ + +P  A+      ++L PTREL+ QI D
Sbjct:  194 DDDKEDDDEEREEDTAEEMASFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPII-----ERLLYKP--AKVASTRVIVLTPTRELAIQIAD 320          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  562 ENVPPPVNT-FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            E+ P   +T F  + L   +   I   K+ KPTP+Q  +IPI++ G+D++A AQTGSGKT A+  PII     E+ + +P  +  V    +IL PTREL+ Q+++
Sbjct:  122 ESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII-----ERLLYKPSTSTKV----IILTPTRELALQVYE 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            G DI++E   AE E     F A E+   E S   +     +F E +L   +   +    +  PTP+QR  IP+++ G+D++  A TGSGKTAAF  PI+     E+ + RPR   T      IL PTREL+ Q ++ A
Sbjct:  266 GSDIESEVD-AEEEAKRKAFFAPEEQTSEQSAAELSK--KSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL-----ERLLFRPRKVPT--SRVAILMPTRELAVQCYNVA 393          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEID----LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            ++  G ++P P+  F++++    + + L  NI    Y +P+P+Q   IPI +  R+++A A TGSGKTA+F  PI+  +    Y  +  G R+V     I+APTREL+ QI+
Sbjct:  183 IKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQAL----YEPKKEGFRSV-----IIAPTRELAQQIY 285          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVK-PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY---VQRPRGARTVYPLALILAPTRELSSQIHD 873
            ++ +   GE   PP+ +F E+   + + LN    K +K PTP+Q   +P  +AGRDL+  A TGSGKT  F  P+I   + ++Y    +R  G     P  LI+ P+REL+ Q H+
Sbjct:  162 ELRILVEGETPSPPIRSFREMKFPKGI-LNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEG-----PYGLIICPSRELAKQTHE 271          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 46/149 (30.87%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQ------PFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + +PF  D   E       P  E  N  +  D      ++  G N   P+  ++++ L   +   I  R  Y  P+ +Q  AIP  ++GRD++  A+TGSGKT +F  P++  I  +  +++  G     P+ LI+ PTREL+ QIH E
Sbjct:  271 QYHPFRKDFYTEPTEISKLPEEEVANLRLKLDG-----IKVRGVNCTRPIIRWSQLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDG-----PIGLIMTPTRELALQIHKE 409          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  469 DDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPV-NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D+ID E    EA+      D Y     ET G+     +   F  + L   +   +    YVKP+P+Q   IPI++ G+D++A A TGSGKTAAF  PII     E+ + +P  A+      ++L PTREL+ Q+ D
Sbjct:  200 DEIDEEDDSEEAKA-----DFYAP---ETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII-----ERLLYKP--AKIASTRVIVLLPTRELAIQVAD 320          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  469 DDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPV-NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D+ID E    EA+      D Y     ET G+     +   F  + L   +   +    YVKP+P+Q   IPI++ G+D++A A TGSGKTAAF  PII     E+ + +P  A+      ++L PTREL+ Q+ D
Sbjct:  202 DEIDEEDDSEEAKA-----DFYAP---ETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII-----ERLLYKP--AKIASTRVIVLLPTRELAIQVAD 322          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DBP2_PICGU6.523e-1234.91ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
RRP3_ASPOR8.519e-1235.71ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
DRS1_VANPO8.519e-1235.82ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DRS1_CANAL8.519e-1239.05ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DRS1_ASPOR8.519e-1236.23ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
DDX52_DICDI8.519e-1235.71Probable ATP-dependent RNA helicase ddx52 OS=Dicty... [more]
DDX41_DROME8.519e-1236.21ATP-dependent RNA helicase abstrakt OS=Drosophila ... [more]
PRP5_DEBHA1.113e-1130.87Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DRS1_YEAST1.113e-1136.03ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS71.113e-1136.03ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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