CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  544 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            P E +       +++F E+ L   +   +    + KPTP+Q   IPIS+ G+D++  A TGSGKTAAF  PI+     E+ + RP+   T     +IL PTREL+ Q H
Sbjct:  280 PEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPIL-----ERLLYRPKKVPTT--RVVILTPTRELAIQCH 381          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_ASPTN (ATP-dependent RNA helicase dbp9 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp9 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  538 DIPV-ETSGENVPPPVNT--FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D+P  E + ++V   V+   F  ++L   L   + + K+ KPT VQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++       A T     LIL PTREL+ Q+ +
Sbjct:    9 DVPSPEAADDSVKNDVDNLDFESLNLDPRLRQALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKANDPSLKATT----GLILVPTRELAEQVQN 119          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_ASPOR (ATP-dependent RNA helicase dbp9 OS=Aspergillus oryzae GN=dbp9 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            F  ++L   L   + + K+ KPT VQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++       A T     LIL PTREL+ Q+ +
Sbjct:   29 FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKATDPSFKATT----GLILVPTRELAEQVQN 119          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_YEAST (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae GN=ROK1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG ++P P+ +F ++       + L  N+    + +PTP+Q   IP+++  RD++AC  TGSGKT AF  P++  I+ ++     +G        LI++PT+EL++QI  E
Sbjct:  109 SGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKG--------LIISPTKELANQIFIE 211          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            F  + L EE+   +R   Y  PTP+QR A+P+ +AG D+ A A+TGSGKTAAF  P+I  + R        G R     ALIL+PTR+L++Q
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRH---DAGAGIR-----ALILSPTRDLATQ 134          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            F  + L EE+   +R   Y  PTP+QR A+P+ +AG D+ A A+TGSGKTAAF  P+I  + R        G R     ALIL+PTR+L++Q
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRH---DAGAGIR-----ALILSPTRDLATQ 134          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            + S  N+ P +N F+++     ++ N     Y  PTP+Q  + P S++GRD++  A+TGSGKT AF  P +  +      +     RT +P A+I++PTREL+ Q H
Sbjct:  170 DPSSSNLRPIMN-FSQLPQSNLISKN-PFAAYTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQTH 274          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_CHAGB (ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  643 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            +  PTP+Q  + P +++GRD++  A+TGSGKT AF  P I  +         +G RT Y  A++++PTREL+ Q H
Sbjct:  201 FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYARAVVVSPTRELAMQTH 276          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  466 GDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G D D      EAE+          I   ++         +FA     + L  NI +  Y +PTP+QR +IP+ +  RD++  A+TGSGKTAAF  P+I  +     ++ P G R     A+IL+P+REL+ Q + +
Sbjct:   82 GSDFDFASLDFEAEDNEEEDKTLSSILALSNPTAKKAKAGSFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLK----LRSPSGVR-----AVILSPSRELALQTYKQ 209          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG ++P P+ +F ++         L  N+    + +PTP+Q   IP+++  RD++AC  TGSGKT AF  P++  I+ ++     +G        LI++PT+EL++QI  E
Sbjct:  109 SGIDIPLPIGSFEDLISRFSFDRRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKG--------LIISPTKELANQIFIE 211          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DRS1_NEUCR1.898e-1137.61ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DBP9_ASPTN1.898e-1137.39ATP-dependent RNA helicase dbp9 OS=Aspergillus ter... [more]
DBP9_ASPOR1.898e-1140.00ATP-dependent RNA helicase dbp9 OS=Aspergillus ory... [more]
ROK1_YEAST2.479e-1133.33ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]
RH29_ORYSJ2.479e-1144.57DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI2.479e-1144.57DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
DBP3_NEUCR2.479e-1135.51ATP-dependent RNA helicase dbp-3 OS=Neurospora cra... [more]
DBP3_CHAGB2.479e-1140.79ATP-dependent RNA helicase DBP3 OS=Chaetomium glob... [more]
DBP10_LODEL2.479e-1132.85ATP-dependent RNA helicase DBP10 OS=Lodderomyces e... [more]
ROK1_YEAS73.237e-1133.33ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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