CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  643 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            Y  PTP+Q  +IP+++ GRDL+  A+TGSGKTAAF  PI+  +M      +P+         LILAPTREL+ QI +
Sbjct:   79 YKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM-----NKPQSL-----FGLILAPTRELACQISE 145          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_CANAL (ATP-dependent RNA helicase MAK5 OS=Candida albicans GN=MAK5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  478 DAEQPFAEA--ENTGINFDAYEDIPVETSGE-NVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYV--QRPRGARTVYPLALILAPTRELSSQIHD 873
            D +   AE+  E   ++F A  D+P+    E N+P     + E DLG  ++      + +  + KPTP+Q+  IPI+++G+D++  A TGSGKT A+  PI+   ++   +  Q  +  +  +P  +I APTREL+ Q+ D
Sbjct:  160 DKDDKLAESNDELNAVSF-ANLDLPLPDDNEINLP----NWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKKINHPTGIIFAPTRELAHQVVD 295          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  544 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            P E + +       TF  ++L   +   I    Y  PTP+Q   IPI++ G+DL+A A TGSGKTAA+  P++  ++        + ++      ++L PTRELS Q+ D
Sbjct:  239 PEEENNDKTESVHKTFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLY-------KSSKVAATKVVVLTPTRELSIQVAD 341          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D ++  AE E     F A    P ET        +++F  + L   +   +    + KPTP+Q   IPI++ G+D++  A TGSGKTAAF  PI+     E+ + RP+   T     ++L PTREL+ Q H  A
Sbjct:  244 DDDEEDAEEEARRKEFFA---APEETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPIL-----ERLLYRPKKVPTT--RVVVLTPTRELAIQCHSVA 367          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  469 DDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D  +  Q  AE E     F A E+   +TS   +     +F E +L   +   +    +  PTP+QR  IP+++ G+D++  A TGSGKTAAF  PI+     E+ + RPR   T      IL PTREL+ Q ++ A
Sbjct:  273 DSDEESQVDAEEEEKRKAFFAPEE--EKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL-----ERLLFRPRKVPT--SRVAILMPTRELAVQCYNVA 400          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  463 FGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVN-TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            FGD    EQ  A  E+T      +        GE     V+ TF  + L   +   +    Y KP+P+Q   IPI++ G+D++A A TGSGKTAAF  PII     E+ + +P  A+      L+L PTREL+ Q+ D
Sbjct:  184 FGD----EQEEAREEDTAEEMAQF--YAPSNEGEEAKNVVHSTFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPII-----ERLLYKP--AKIASTRVLVLTPTRELAIQVAD 308          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_YEAS7 (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  577 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            P+ +F  + L   +   I   K+ KPTP+Q  A P  ++G+D++  A+TGSGKT AF  P IS +M +   Q+ RG +      L+++PTREL+SQI+D
Sbjct:  112 PLLSFDYLSLDSSIQAEIS--KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND---QKKRGIQ-----VLVISPTRELASQIYD 200          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            D E    + +N   + +AY  +  +   ++      +FA   L + + +NI +  + +PTP+QR  IP+ +  RD++  A+TGSGKTAAF  P+I  +          GAR     A+IL+P+REL+ Q H
Sbjct:   83 DDEDEKKKVDNDDDDVNAYFSVNTDAKSKHKK---GSFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTH---SSKIGAR-----AIILSPSRELAMQTH 202          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  580 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            V TF+E++L E L   ++   + +PT +Q  AIP ++ GRD++  A TG+GKTAA+  P +  ++   + ++  G     P  LIL PTREL+ Q+ D A
Sbjct:    3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLL--DFPRKKSGP----PRILILTPTRELAMQVSDHA 96          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  643 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQIHDE 876
            Y  PTP+QR +IP+++ GRDL+  A+TGSGKTAAF  PI+  ++      +P+      PL  L+LAPTREL+ QI  +
Sbjct:   80 YKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALL-----DKPQ------PLFGLVLAPTRELAYQISQQ 147          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RRP3_AJECN4.228e-1146.75ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
MAK5_CANAL4.228e-1132.62ATP-dependent RNA helicase MAK5 OS=Candida albican... [more]
DRS1_YARLI4.228e-1133.64ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
DRS1_CHAGB4.228e-1134.33ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DRS1_ASPNC4.228e-1135.04ATP-dependent RNA helicase drs1 OS=Aspergillus nig... [more]
DRS1_ASHGO4.228e-1136.23ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DBP3_YEAS74.228e-1140.40ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
DBP10_CANGA4.228e-1132.82ATP-dependent RNA helicase DBP10 OS=Candida glabra... [more]
SRMB_ECOLI5.522e-1138.00ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
RRP3_BOTFB5.522e-1146.84ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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