CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  583 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            N F +  L  EL + I    + +P+P+Q  +IPI++ GRD++A A+ G+GKTAAFC P++  I ++  V +          A+I+ PTREL+ Q
Sbjct:  131 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ----------AVIIVPTRELALQ 214          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_NEUCR (ATP-dependent RNA helicase mak-5 OS=Neurospora crassa GN=mak-5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  553 TSGENVPPP------VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            T  E +P P      ++ +  +DL   +  +I + ++ KPT +Q  AIP  +AG D++  A TGSGKT AF  P+I   +     ++          ALIL+PTREL+ QI D
Sbjct:  193 TKLEELPEPEEEEIDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEIMAGHDVIGKASTGSGKTLAFGIPVIESWLSAAETRKQNKEERKGATALILSPTRELAQQIRD 305          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            TF  + L   +   + +  Y KP+P+Q  +IPI++ GRD++A A TGSGKTAA+  PII     E+ + +P  ++      ++L PTREL+ Q+ D
Sbjct:  223 TFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPII-----ERLLYKP--SKVASTRVIVLTPTRELAIQVGD 311          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_CRYNE (ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            DA+      T+   +P   ++F  ++L   L   +   ++  PTP+Q  AIP+++ GRD++  A TGSGKTAAF  PI+     E+   R RG        L+L PTREL+ Q
Sbjct:  206 DAFFSSDPTTTDPTLP---SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL-----ERLCYRDRGKGGAACRVLVLCPTRELAVQ 310          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_VANPO (ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  523 FDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            F    ++ VE   +    P+ +F+ I L   +   I   K+ KPTP+Q  + P  +AG+D++  A+TGSGKT AF  P I+ I+ +   +  +    V    LI++PTREL+SQI+D
Sbjct:   97 FFTTNEVAVEDESKLNLRPLLSFSHISLDSRIQAEIS--KFPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQV----LIISPTRELASQIYD 207          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  580 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI-MREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + TF E+ L +E+   I R  + + TP+Q   IP+S+  +D++  AQTG+GKTAAF  PI+  + ++   VQ           AL++APTREL+ Q+ +E
Sbjct:    1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQ-----------ALVVAPTRELAIQVSEE 89          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  643 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867
            Y  PTP+QR +IP+++ GRDL+  A+TGSGKTAAF  PI+  ++      +P+      PL  L+LAPTREL+ QI
Sbjct:   76 YKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLL-----DKPQ------PLFGLVLAPTRELAYQI 140          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            DAE   +       + D  E      S E  P P  +F ++ + ++L        Y  PTP+Q  +IP+++  RDL+  A+TGSGKTAAF  PI+  +M      +P+         L+LAPTREL+ QI
Sbjct:   19 DAESSSSHESVASKHSDNAEAQDGPESSETKPAP-KSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALM-----DKPQSF-----FGLVLAPTRELAFQI 137          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_SCLS1 (ATP-dependent RNA helicase mak5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mak5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS------GIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            + +E +  + +GE     V+ + E+DL     + + +  + KPTP+Q  AIP  +AG D++  A TGSGKT AF  PI+       G + E  +++     T  P ALIL+PTREL+ Q+
Sbjct:  197 NVFEALDEDAAGE---VEVSGWVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEKWLEVYGELDEDELKK----STRPPTALILSPTRELAHQL 309          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: HAS1_PHANO (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  499 EAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            +A  +G N  A  D+P  TS   V  P   F E++L E     I+   +   T +QR AIP  ++G+D++  A+TGSGKT AF  P I  +   ++  +PR    V    ++++PTREL+ QI
Sbjct:  104 DAAGSGANALAVADLPSGTSIPTVDDPTR-FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRF--KPRNGTGV----IVVSPTRELALQI 219          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RH8_ARATH5.522e-1138.30DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
MAK5_NEUCR5.522e-1135.40ATP-dependent RNA helicase mak-5 OS=Neurospora cra... [more]
DRS1_PICST5.522e-1138.54ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DRS1_CRYNE5.522e-1136.28ATP-dependent RNA helicase DRS1 OS=Cryptococcus ne... [more]
DBP3_VANPO5.522e-1135.90ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma... [more]
CSHA_GEOKA5.522e-1138.00DEAD-box ATP-dependent RNA helicase cshA OS=Geobac... [more]
RRP3_SCLS17.212e-1148.68ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_ASPCL7.212e-1134.62ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
MAK5_SCLS17.212e-1135.83ATP-dependent RNA helicase mak5 OS=Sclerotinia scl... [more]
HAS1_PHANO7.212e-1135.77ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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