CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  472 DIDAEQPFAEAENTGINFDAYEDIPV---ETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D + E P   A+     F A E+ P    ETS  +      TF   +L   +   +    +  PTP+QR AIP+ + G+DL+  A TGSGKTAAF  PI+     E+ + RPR   T      IL PTREL+ Q ++ A
Sbjct:  287 DSEEEDPEEVAKRNA--FFAPEENPTKSEETSSNS------TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPIL-----ERLLYRPRKVPT--SRVAILMPTRELAVQCYNVA 410          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  583 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            +TF+ + L   +  ++ +  YVKP+P+Q   IP+ + GRD++  AQTGSGKTAAF  P++  +                P  L+LAPTREL+ Q+
Sbjct:    6 STFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL----------NINLKAPQILVLAPTRELAVQV 90          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  583 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            +TF+ + L   +  ++    YVKP+P+Q   IP+ + GRD++  AQTGSGKTAAF  P++  +                P  L+LAPTREL+ Q+
Sbjct:    6 STFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL----------NINLKAPQILVLAPTRELAVQV 90          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            FAEI L   L    R+    +PTPVQ   IP  + GRD + CA+TGSGKTAAF  PI+  +  + Y              L+L PTREL+ QI ++
Sbjct:    4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPY----------GIFCLVLTPTRELAYQIAEQ 89          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            F ++ + +     +R   ++K T +Q  +IP+S+ G D++A A+TGSGKT AF  P+I  + RE++ +           ALI++PTREL+ QI++
Sbjct:   43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLG------ALIISPTRELAMQIYE 131          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_YEAS7 (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            F ++ + +     +R   ++K T +Q  +IP+S+ G D++A A+TGSGKT AF  P+I  + RE++ +           ALI++PTREL+ QI++
Sbjct:   43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLG------ALIISPTRELAMQIYE 131          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_KLULA (ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            + SG N+ P ++ F+++   +++   I   K+ KPTP+Q  + P  +AG+D++  A+TGSGKT AF  P I+ I+         G ++     L+++PTREL+SQI+D
Sbjct:   84 DPSGSNIVPYLD-FSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTS-------GDKSSSVKVLVISPTRELASQIYD 181          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  580 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +  F E+ + ++    +    + +PTP+Q+ +IP ++ G+D++  AQTG+GKT AF  P+I  ++ +  VQ           ALILAPTREL+ Q+ ++
Sbjct:    1 MQNFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQSGVQ-----------ALILAPTRELAMQVAEQ 88          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  544 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            P E +  +     ++F  + L   +   +    + KPTP+Q  +IPI++ G+D++  A+TGSGKT AF  PI+     E+ + RP+   T     ++L PTREL+ Q H
Sbjct:  243 PEEENNPDKKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPIL-----ERLLYRPKKIPTT--RVVVLLPTRELAIQCH 344          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            TF E+ L   L   +++  + +PTP+Q  AIP+++ G+D++A A TGSGKTAAF  P++     E+ + R    R +    LIL PTREL+ Q
Sbjct:  191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVL-----ERLLFRDSEYRAI--RVLILLPTRELALQ 276          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DRS1_COCIM7.212e-1136.69ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DEAD_BUCAP7.212e-1137.89Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_BUCAI7.212e-1137.89Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DDX49_MOUSE7.212e-1141.67Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DBP4_YEAST7.212e-1135.79ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
DBP4_YEAS77.212e-1135.79ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
DBP3_KLULA7.212e-1136.11ATP-dependent RNA helicase DBP3 OS=Kluyveromyces l... [more]
Y956_STAHJ9.419e-1134.34Probable DEAD-box ATP-dependent RNA helicase SH095... [more]
DRS1_GIBZE9.419e-1133.94ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DDX27_DICDI9.419e-1140.86Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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