CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15 Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 535 EDIPVETSGE-NVPPPVNTFAEI-DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G N+P P+ ++ E ++ + I R Y +PTP+QR AIPI++ RD++ A+TGSGKTA+F P+IS I + + ++ P LILAPTREL+ QI DEA Sbjct: 145 EDYSIVTKGGGNIPNPLRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYIC--ELPKLDERSKVNGPYGLILAPTRELAMQIKDEA 259
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15 Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY------PLALILAPTRELSSQIHDEA 879 ED + T G+ +P ++ E L ++ +++ + +PTPVQR +IPIS+ RD++ A+TGSGKT AF P++ Y+ R G Y PLAL+LAPTREL+ QI EA Sbjct: 169 EDYGITTKGKKIPHATRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLL------HYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEA 283
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15 Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 E+ + T G +P P+ ++AE +L L + Y +PTP+QR AIPI+ RDL+ A TGSGKTAAF P++ + + + P ALILAPTREL QI EA Sbjct: 253 ENFGIATKGGAIPNPMRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLTEFNKNDGPYALILAPTRELVQQIETEA 365
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 1 Query: 481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 A++ A+ EN NFD D E +F E+ L EL I++ K+ KPTP+Q AIP ++ G+D++ AQTGSGKTAAF PI+ + Q L+LAPTREL+ QI + Sbjct: 38 AQEEPAKEENVAENFDTVVDPTAELK-------FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAY----------YGLVLAPTRELAYQIKE 151
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 + G +VP PV F ++ E + I + +V+PTP+Q P+++ GRDL+ A+TGSGKT A+ P I + + + G P+ L+LAPTREL+ QI EA Sbjct: 79 ITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDG-----PIVLVLAPTRELAVQIQQEA 184
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 469 DDIDAEQPFAEAENTGINFDA---YEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 DD D + E E D YE TS + TF E+ L + ++++ + PTPVQ IPI++ G+D++A AQTGSGKTAA+ PII ++ YV+ + A+IL PTREL+ Q+HD Sbjct: 157 DDEDENEDEDEEEEVDTKEDLDNFYESQETNTSASALKS--KTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLL---YVKNSTSTK-----AIILTPTRELAIQVHD 284
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_NEUCR (ATP-dependent RNA helicase dbp-9 OS=Neurospora crassa GN=dbp-9 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1 Query: 586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870 TF+++ L L + + + KPT VQR AIP+++AG+D++ A+TGSGKTAA+ P++SGI++ R T + ALIL PTREL+ Q+H Sbjct: 96 TFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILK-----RKATDPTPFTSALILVPTRELADQVH 185
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_BOTFB (ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp9 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870 D+PV T G + TFA + L L I + + PT VQ AIP+++ GRD++A A+TGSGKTAA+ PI+ I++ R + T ALIL PTREL+ Q++ Sbjct: 9 DVPVPTEGSDAIKENVTFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILK-----RKELSSTQCTTALILVPTRELADQVY 114
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 A +E F A +I V+ G N+P PV TF E + ++ + PTP+Q P++++GRD++ A+TGSGKT +C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 122 ARSEEDVAKFRAQHNIAVQ--GPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQQE 241
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 A +E F A +I V+ G N+P PV TF E + ++ + PTP+Q P++++GRD++ A+TGSGKT +C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 75 ARSEEDVAKFRAQHNIAVQ--GPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQQE 194 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |