CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  535 EDIPVETSGE-NVPPPVNTFAEI-DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G  N+P P+ ++ E  ++   +   I R  Y +PTP+QR AIPI++  RD++  A+TGSGKTA+F  P+IS I   +  +    ++   P  LILAPTREL+ QI DEA
Sbjct:  145 EDYSIVTKGGGNIPNPLRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYIC--ELPKLDERSKVNGPYGLILAPTRELAMQIKDEA 259          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY------PLALILAPTRELSSQIHDEA 879
            ED  + T G+ +P    ++ E  L  ++  +++   + +PTPVQR +IPIS+  RD++  A+TGSGKT AF  P++       Y+ R  G    Y      PLAL+LAPTREL+ QI  EA
Sbjct:  169 EDYGITTKGKKIPHATRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLL------HYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEA 283          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            E+  + T G  +P P+ ++AE +L   L   +    Y +PTP+QR AIPI+   RDL+  A TGSGKTAAF  P++  +   +        +   P ALILAPTREL  QI  EA
Sbjct:  253 ENFGIATKGGAIPNPMRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLTEFNKNDGPYALILAPTRELVQQIETEA 365          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            A++  A+ EN   NFD   D   E           +F E+ L  EL   I++ K+ KPTP+Q  AIP ++ G+D++  AQTGSGKTAAF  PI+  +   Q               L+LAPTREL+ QI +
Sbjct:   38 AQEEPAKEENVAENFDTVVDPTAELK-------FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAY----------YGLVLAPTRELAYQIKE 151          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            +   G +VP PV  F ++   E +   I +  +V+PTP+Q    P+++ GRDL+  A+TGSGKT A+  P I  +  +  +    G     P+ L+LAPTREL+ QI  EA
Sbjct:   79 ITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDG-----PIVLVLAPTRELAVQIQQEA 184          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  469 DDIDAEQPFAEAENTGINFDA---YEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            DD D  +   E E      D    YE     TS   +     TF E+ L   +  ++++  +  PTPVQ   IPI++ G+D++A AQTGSGKTAA+  PII  ++   YV+     +     A+IL PTREL+ Q+HD
Sbjct:  157 DDEDENEDEDEEEEVDTKEDLDNFYESQETNTSASALKS--KTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLL---YVKNSTSTK-----AIILTPTRELAIQVHD 284          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_NEUCR (ATP-dependent RNA helicase dbp-9 OS=Neurospora crassa GN=dbp-9 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            TF+++ L   L   + +  + KPT VQR AIP+++AG+D++  A+TGSGKTAA+  P++SGI++     R     T +  ALIL PTREL+ Q+H
Sbjct:   96 TFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILK-----RKATDPTPFTSALILVPTRELADQVH 185          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_BOTFB (ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp9 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            D+PV T G +      TFA + L   L   I +  +  PT VQ  AIP+++ GRD++A A+TGSGKTAA+  PI+  I++     R   + T    ALIL PTREL+ Q++
Sbjct:    9 DVPVPTEGSDAIKENVTFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILK-----RKELSSTQCTTALILVPTRELADQVY 114          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            A +E     F A  +I V+  G N+P PV TF E      +   ++   +  PTP+Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  122 ARSEEDVAKFRAQHNIAVQ--GPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQQE 241          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            A +E     F A  +I V+  G N+P PV TF E      +   ++   +  PTP+Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:   75 ARSEEDVAKFRAQHNIAVQ--GPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQQE 194          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
PRP28_YARLI8.233e-1542.74Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_LODEL8.233e-1539.67Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_CHAGB8.233e-1541.74Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
RRP3_DEBHA1.075e-1438.17ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
RH20_ORYSJ1.075e-1437.84DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
DRS1_LODEL1.075e-1436.96ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]
DBP9_NEUCR1.075e-1444.21ATP-dependent RNA helicase dbp-9 OS=Neurospora cra... [more]
DBP9_BOTFB1.075e-1441.44ATP-dependent RNA helicase dbp9 OS=Botryotinia fuc... [more]
DBP2_SCLS11.075e-1436.22ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_BOTFB1.075e-1436.22ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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