CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS--GIMREQY--VQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  +   G N+P P+ ++ E  +   L   I +  Y +PTP+QR AIP ++  RD++  A+TGSGKT AF  P++S    + + Y  V+  + +     L L+LAPTREL+ QI  EA
Sbjct:  134 EDFSITCKGNNIPNPLRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEA 252          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            E+  + T G  +P P+ ++ E  L   L   ++   Y +PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  +   +        +   P ALILAPTREL  QI  EA
Sbjct:  277 ENFGIATKGGAIPNPMRSWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLTEYNKNDGPYALILAPTRELVQQIESEA 389          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G+NVP PV TF E    + +   ++   + KPTP+Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  117 GKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDG-----PIVLVLAPTRELAVQIQAE 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            TF E++L  +L  +I   K+ KPTP+Q  AIP ++ G+D++  AQTGSGKTAAF  PI+  +    + Q+P         AL+LAPTREL+ QI D
Sbjct:  124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW---HAQQPY-------FALVLAPTRELTFQIKD 209          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +++ ++  G++VP P+  + +  L  ++   +++  Y KP P+Q  A+PI ++GRD +  A+TGSGKT  F  P++  I  +  V+   G     P+ L++APTREL  QIH +
Sbjct:  513 KELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG-----PIGLVMAPTRELVQQIHSD 621          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_SCLS1 (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++ +G++VP PV  +++  L  +    I++  Y KPT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH E
Sbjct:  471 IKVAGKDVPKPVQKWSQCGLDVKSLDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKNSDG-----PIGLIMTPTRELATQIHKE 575          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            AE    EA +  +  D      ++  G +VP PV  +++  LG +    I R  Y  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH +
Sbjct:  528 AEMTDEEAASLRLELDG-----IKVRGVDVPKPVMKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEG-----PIGLIMTPTRELATQIHKD 649          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI---ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G  +P P+ ++ E +L + L   +    Y  P+P+QR AIPI++  RDL+  A TGSGKTAAF  P+   IS +     + +  G     P ALI+APTREL  QI  EA
Sbjct:  272 EDFGIATKGGMIPNPMRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDG-----PYALIMAPTRELVQQIETEA 384          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP--RGARTVYPLALILAPTRELSSQIHDE 876
            +   G ++P P+ TF ++D   ++N     NI    +  PTP+Q  AIP+ + GR+L+A A TGSGKT AF  PI+       ++++P  +G R     ALI++PTREL+SQIH E
Sbjct:  147 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL------MHLKQPTNKGFR-----ALIISPTRELASQIHRE 251          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G+NVP PV +F E    + +   I++  + +P+ +Q  A P++++GRDL+A A+TGSGKT  F  P +  I  +  ++   G     P+ALILAPTREL++QI  E
Sbjct:  122 GQNVPKPVTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDG-----PIALILAPTRELANQIQVE 222          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
PRP28_PICGU1.404e-1438.66Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_NEUCR1.404e-1440.87Pre-mRNA-splicing ATP-dependent RNA helicase prp-2... [more]
DBP2_COCIM1.404e-1439.62ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
RRP3_CANAL1.834e-1445.83ATP-dependent rRNA helicase RRP3 OS=Candida albica... [more]
RH42_ARATH1.834e-1434.21DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
PRP5_SCLS11.834e-1438.18Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_NEOFI1.834e-1435.61Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_GIBZE1.834e-1441.53Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX52_BOVIN1.834e-1440.52Probable ATP-dependent RNA helicase DDX52 OS=Bos t... [more]
DBP2_USTMA1.834e-1440.57ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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