CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS--GIMREQY--VQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + G N+P P+ ++ E + L I + Y +PTP+QR AIP ++ RD++ A+TGSGKT AF P++S + + Y V+ + + L L+LAPTREL+ QI EA Sbjct: 134 EDFSITCKGNNIPNPLRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEA 252
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14 Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 E+ + T G +P P+ ++ E L L ++ Y +PTP+QR AIPI++ RDL+ A TGSGKTAAF P++ + + + P ALILAPTREL QI EA Sbjct: 277 ENFGIATKGGAIPNPMRSWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL--VYISELPPLTEYNKNDGPYALILAPTRELVQQIESEA 389
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14 Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G+NVP PV TF E + + ++ + KPTP+Q P++++GRD++ A+TGSGKT +C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 117 GKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDG-----PIVLVLAPTRELAVQIQAE 217
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 TF E++L +L +I K+ KPTP+Q AIP ++ G+D++ AQTGSGKTAAF PI+ + + Q+P AL+LAPTREL+ QI D Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW---HAQQPY-------FALVLAPTRELTFQIKD 209
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 +++ ++ G++VP P+ + + L ++ +++ Y KP P+Q A+PI ++GRD + A+TGSGKT F P++ I + V+ G P+ L++APTREL QIH + Sbjct: 513 KELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG-----PIGLVMAPTRELVQQIHSD 621
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_SCLS1 (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ +G++VP PV +++ L + I++ Y KPT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH E Sbjct: 471 IKVAGKDVPKPVQKWSQCGLDVKSLDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKNSDG-----PIGLIMTPTRELATQIHKE 575
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1 Query: 481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 AE EA + + D ++ G +VP PV +++ LG + I R Y PT +Q AIP ++GRD++ A+TGSGKT AF P+ I ++ ++ G P+ LI+ PTREL++QIH + Sbjct: 528 AEMTDEEAASLRLELDG-----IKVRGVDVPKPVMKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEG-----PIGLIMTPTRELATQIHKD 649
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI---ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +P P+ ++ E +L + L + Y P+P+QR AIPI++ RDL+ A TGSGKTAAF P+ IS + + + G P ALI+APTREL QI EA Sbjct: 272 EDFGIATKGGMIPNPMRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDG-----PYALIMAPTRELVQQIETEA 384
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNL----NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP--RGARTVYPLALILAPTRELSSQIHDE 876 + G ++P P+ TF ++D ++N NI + PTP+Q AIP+ + GR+L+A A TGSGKT AF PI+ ++++P +G R ALI++PTREL+SQIH E Sbjct: 147 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL------MHLKQPTNKGFR-----ALIISPTRELASQIHRE 251
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G+NVP PV +F E + + I++ + +P+ +Q A P++++GRDL+A A+TGSGKT F P + I + ++ G P+ALILAPTREL++QI E Sbjct: 122 GQNVPKPVTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDG-----PIALILAPTRELANQIQVE 222 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |