CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  529 AYEDIPVETSGENVP----PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            A +D P+ET  E       P   +F ++ + ++L        Y  PTP+Q  +IP+++ GRDL+  A+TGSGKTAAF  PI+  +M     + P+         LILAPTREL+ QI
Sbjct:   30 AQQDDPLETQDEATATESRPAPKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM-----ENPQSF-----FGLILAPTRELAFQI 136          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSG--ENVPPPVNTFAEIDLGEELNLNIRRCK-YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D  +   EAE+ G      + + V   G  E     + TFAE +L E +   +  CK + KP+P+Q H  P  + GRDL+  A+TGSGKT AF  P I  ++++   +   G++ V P  L+L+PTREL+ QI D
Sbjct:   79 DVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENV---LDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKN-KKIGGGSKKVNPTCLVLSPTRELAVQISD 209          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  481 AEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            A+    EA N  +  D      ++  G +VP PV  +++  LG +    I +  +   T +Q  AIP  ++GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+ LI+ PTREL++QIH +
Sbjct:  512 AQMSEEEAANLRLELDG-----IKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLENMEG-----PIGLIMTPTRELATQIHKD 633          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_PHANO (ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria nodorum GN=MAK5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  529 AYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            A++ +      E+    V+ + E++L  ++  ++ + K+ KPT +Q   IP  +AGRD++  A TGSGKT AF  PII   +  +   + +  +   PLALI+APTREL+ QI
Sbjct:  231 AFDILANRADDEDDEVDVSAWEELELSTKILESLAKLKFSKPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASK--SKSKDVKDKTPLALIIAPTRELAHQI 341          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 50/146 (34.25%), Postives = 72/146 (49.32%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNT------FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            E N   DD D E    +A         + + P+ TS ++     +T      F   DL   +   +    + KPTP+Q   IPI++AG+D++A A TGSGKTAAF  P I  +      + P  A++     LILAPTREL+ Q +
Sbjct:  287 ESNSSEDDSDLETEQEKARKAAF----FAEDPIATSADSSSKSKSTNDAESSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKS---RVLILAPTRELAIQCY 425          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_EMENI (ATP-dependent RNA helicase dbp9 OS=Emericella nidulans GN=dbp9 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            F  ++L   L   + + K+ KPTPVQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++ +     A T     LIL PTREL+ Q+
Sbjct:   30 FETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATT----GLILVPTRELAEQV 118          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_PHANO (ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria nodorum GN=DBP4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  583 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            N F+++ L +     ++ C +   T +QR A+P+++ G D++  A+TGSGKT +F  P++  + R Q+V    G       ALIL+PTREL+ QI D
Sbjct:   49 NDFSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLENLYRLQHVGADAGLG-----ALILSPTRELAIQIFD 140          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP4_KLULA (ATP-dependent RNA helicase DBP4 OS=Kluyveromyces lactis GN=DBP4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  547 VETSGENVPPPV---NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            +ET  E   P +   N F ++ + E+    ++   ++K T +QR +IP+S+ G D++  A+TGSGKT AF  P+I  + RE++             ALI++PTREL+ QI++
Sbjct:   26 LETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG------ALIISPTRELAMQIYE 131          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G NVP PV  F E    + +   ++   + +PT +Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ LILAPTREL+ QI  E
Sbjct:  111 GRNVPRPVENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLILAPTRELAVQIQTE 211          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            TF E+ + E+L        Y  PTP+QR +IP+++ GRDL+  A+TGSGKTAAF  PI+  +M     ++P+         L+LAPTREL+ QI
Sbjct:   49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALM-----EKPQPF-----FGLVLAPTRELAYQI 132          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RRP3_ASPFU1.006e-1238.46ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
RH5_ARATH1.006e-1237.04DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
PRP5_EMENI1.006e-1233.33Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
MAK5_PHANO1.006e-1236.28ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria n... [more]
DRS1_USTMA1.006e-1234.25ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
DBP9_EMENI1.006e-1241.94ATP-dependent RNA helicase dbp9 OS=Emericella nidu... [more]
DBP4_PHANO1.006e-1237.11ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria n... [more]
DBP4_KLULA1.006e-1234.82ATP-dependent RNA helicase DBP4 OS=Kluyveromyces l... [more]
DBP2_NEOFI1.006e-1237.74ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
RRP3_ASPNC1.314e-1243.62ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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