CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            E++  +T   +      TF E+ + + L        Y  PTP+Q   IPI++ GRDL+  A+TGSGKTAAF  P++  +M      +P+        +LILAPTREL+ QI
Sbjct:   12 EEVSPDTETPSTTTAPKTFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALM-----DKPQQFH-----SLILAPTRELAQQI 112          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG +VP P+ +F ++       + L  N+    + +PTP+Q  +IPI +  RD++ACA TGSGKT AF  P++  I+ ++         TV    LI++PT+EL++QI  E
Sbjct:  120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK--------TTVGLKGLIISPTKELANQIFIE 222          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  499 EAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            EAE   +  D      ++  G++ P PV  +    L +     I+   +  PT +Q  AIP  ++GRD++  A+TGSGKT AF  P++  +  ++ V    G     P+A++++PTREL+SQI+ E
Sbjct:  380 EAELVRLEMDG-----IKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEG-----PIAVVMSPTRELASQIYKE 495          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY---VQRPRGARTVYPLALILAPTRELSSQIHD 873
            + + + T GE++PPP+ TF E+ + + +   +      KP+P+Q   +P+ ++GRD++  A TGSGKT  F  P++   + E+    + +  G     P  LIL P+REL+ Q +D
Sbjct:  206 DQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEG-----PFGLILCPSRELARQTYD 316          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            +F +++L   L   I    + +PTP+Q+  IP+ + G+D+ ACA TG+GKTAAF  P++     E+ + +PR A       L+L PTREL  Q+H
Sbjct:  219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL-----ERLIYKPRQAPVT--RVLVLVPTRELGIQVH 306          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            +F +++L   L   I    + +PTP+Q+  IP+ + G+D+ ACA TG+GKTAAF  P++     E+ + +PR A       L+L PTREL  Q+H
Sbjct:  188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL-----ERLIYKPRQAPVT--RVLVLVPTRELGIQVH 275          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_NEOFI (ATP-dependent RNA helicase dbp9 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp9 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            F  ++L   L   + R ++ KPTPVQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++       A T     L+L PTREL+ Q+
Sbjct:   29 FESLNLDPRLRQALIREQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATT----GLVLVPTRELAEQV 117          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G+ +P PV  F E      +   +++  + KPT +Q    P+++ GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  108 GDGIPKPVTNFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDG-----PIVLVLAPTRELAVQIQQE 208          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            AEAE +    +A     VE        P  TFA++ + EEL        Y   TP+Q  +IP+++AG+D++  A+TGSGKTAAF  PI+  ++      +P+         LI+APTREL+ QI  +
Sbjct:   93 AEAEQSDEEAEAQAAAAVEA-------PKKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALL-----DKPQAY-----FGLIMAPTRELAYQISQQ 202          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  568 VPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867
            V  P  TF ++ + + L     +  Y  PTP+Q  +IP+++ GRD++  A+TGSGKTAAF  P++  ++      +P+      PL  L+LAPTREL++QI
Sbjct:   55 VDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL-----DKPQ------PLFGLVLAPTRELATQI 144          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RRP3_ASPTN2.242e-1237.84ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
ROK1_KLULA2.242e-1236.94ATP-dependent RNA helicase ROK1 OS=Kluyveromyces l... [more]
PRP5_CRYNE2.242e-1233.33Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX41_DICDI2.242e-1232.76Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
DDX27_HUMAN2.242e-1238.95Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]
DDX27_BOVIN2.242e-1238.95Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DBP9_NEOFI2.242e-1240.86ATP-dependent RNA helicase dbp9 OS=Neosartorya fis... [more]
DBP2_YARLI2.242e-1235.85ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
RRP3_PHANO2.928e-1236.22ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RRP3_GIBZE2.928e-1238.61ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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