CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867 E++ +T + TF E+ + + L Y PTP+Q IPI++ GRDL+ A+TGSGKTAAF P++ +M +P+ +LILAPTREL+ QI Sbjct: 12 EEVSPDTETPSTTTAPKTFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALM-----DKPQQFH-----SLILAPTRELAQQI 112
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 SG +VP P+ +F ++ + L N+ + +PTP+Q +IPI + RD++ACA TGSGKT AF P++ I+ ++ TV LI++PT+EL++QI E Sbjct: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK--------TTVGLKGLIISPTKELANQIFIE 222
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 1 Query: 499 EAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 EAE + D ++ G++ P PV + L + I+ + PT +Q AIP ++GRD++ A+TGSGKT AF P++ + ++ V G P+A++++PTREL+SQI+ E Sbjct: 380 EAELVRLEMDG-----IKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEG-----PIAVVMSPTRELASQIYKE 495
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY---VQRPRGARTVYPLALILAPTRELSSQIHD 873 + + + T GE++PPP+ TF E+ + + + + KP+P+Q +P+ ++GRD++ A TGSGKT F P++ + E+ + + G P LIL P+REL+ Q +D Sbjct: 206 DQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEG-----PFGLILCPSRELARQTYD 316
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870 +F +++L L I + +PTP+Q+ IP+ + G+D+ ACA TG+GKTAAF P++ E+ + +PR A L+L PTREL Q+H Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL-----ERLIYKPRQAPVT--RVLVLVPTRELGIQVH 306
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870 +F +++L L I + +PTP+Q+ IP+ + G+D+ ACA TG+GKTAAF P++ E+ + +PR A L+L PTREL Q+H Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL-----ERLIYKPRQAPVT--RVLVLVPTRELGIQVH 275
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_NEOFI (ATP-dependent RNA helicase dbp9 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp9 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867 F ++L L + R ++ KPTPVQ AIP+++ G+D++A A+TGSGKTAA+ PI+ I++++ A T L+L PTREL+ Q+ Sbjct: 29 FESLNLDPRLRQALIREQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATT----GLVLVPTRELAEQV 117
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12 Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G+ +P PV F E + +++ + KPT +Q P+++ GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 108 GDGIPKPVTNFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDG-----PIVLVLAPTRELAVQIQQE 208
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 496 AEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 AEAE + +A VE P TFA++ + EEL Y TP+Q +IP+++AG+D++ A+TGSGKTAAF PI+ ++ +P+ LI+APTREL+ QI + Sbjct: 93 AEAEQSDEEAEAQAAAAVEA-------PKKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALL-----DKPQAY-----FGLIMAPTRELAYQISQQ 202
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12 Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 568 VPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867 V P TF ++ + + L + Y PTP+Q +IP+++ GRD++ A+TGSGKTAAF P++ ++ +P+ PL L+LAPTREL++QI Sbjct: 55 VDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL-----DKPQ------PLFGLVLAPTRELATQI 144 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |