CK934547

Overview
NameCK934547
Unique NameCK934547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.366e-22
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTH 249
            ALDP+GLVA+AI H            NISGG +NPAVTFGLA+GG ITILTG+FYW+AQLLG+ VA  LL  VT G   PTH
Sbjct:   50 ALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTH 131          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            A  PSGLVA A+ H            NISGG VNPAVTFG  +GG IT+L GI YWIAQLLGS+VA  +LK  TGGL  P                +I++TF
Sbjct:   52 ATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTF 153          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.551e-19
Identity = 50/102 (49.02%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            A  PSGLVA A+ H            NISGG VNPAVTFG+ LGG IT+L GI YWIAQLLGS+ A FLL   TGG   P                +I++TF
Sbjct:   53 ATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTF 154          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPT 246
            A  P+GL+A A+ H            NISGG VNPAVTFG  +GG IT+  G+ YWIAQLLGS VA FLL+  TGGL   T
Sbjct:   52 ATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGT 132          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   13 PSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            P+GLVA ++ H            N+SGG VNPAVTFG  +GG IT+L  I YWIAQLLG++VA  LLKV TGG+     +             +I++TF
Sbjct:   55 PAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTF 153          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   13 PSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAP 243
            P GLVA+++ H            NISGG VNPA+TFG  LGG+++++  +FYW+AQLLG++VA+ LL++ TGG+  P
Sbjct:   60 PGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPP 136          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   13 PSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            PSGL+A ++ H            NISGG VNPAVTFG  +GG I+++  + YW+AQLLGS+VA  LLK+ TGG      +             +I++TF
Sbjct:   55 PSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTF 153          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            A  P+GL+A ++ H            NISGG VNPAVTFG  +GG I++L  + YW+AQLLGS+VA  LLK+ TGG      +            +++++TF
Sbjct:   52 AATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTF 153          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   13 PSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPT 246
            P+GL+A A+ H            NISGG VNPAVTFG  +GG IT+  G+ YW+AQLLGS VA FLL+  TGG    T
Sbjct:   55 PAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGT 132          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   13 PSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            P GLV +A+ H            N+SGG VNPAVTF   +GG+I+++  I+YW+AQL+G+I+A  LL++ T GL     +            M+II+TF
Sbjct:   63 PGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTF 161          
The following BLAST results are available for this feature:
BLAST of CK934547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TIP21_MAIZE9.366e-2262.20Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP11_ARATH3.935e-2049.02Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH2.551e-1949.02Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ORYSJ2.387e-1754.32Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH4.072e-1744.44Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP31_ORYSJ1.185e-1648.05Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP12_ORYSJ1.547e-1641.41Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE2.021e-1640.20Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_MAIZE2.639e-1652.56Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP32_ARATH2.918e-1539.39Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_H08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934547 ID=CK934547; Name=CK934547; organism=Citrus sinensis; type=EST; length=311bp
GCAGCACTTGATCCATCAGGGCTAGTAGCCCTAGCTATTTGCCATGGATT
TGCTCTATTTGTCGCTGTTGCAGTTGGTGCTAACATCTCAGGTGGCCCCG
TCAACCCAGCCGTCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATC
CTCACTGGCATCTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGC
CAGCTTCCTCCTCAAAGTTGTCACTGGAGGATTGGGAGCTCCTACCCACA
ATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGTTGTGATGGACATCATC
ATCACATTTGG
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