CK934562

Overview
NameCK934562
Unique NameCK934562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1703 contig Csv1_Contig1703:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_RAT (Mitochondrial brown fat uncoupling protein 1 OS=Rattus norvegicus GN=Ucp1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 52/167 (31.14%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VRMQA   L   + R Y    +A   +   E +++LW+G++  + R +I+  ++L TYD +K  ++   ++ D +  H+ ++  AG   ++ ++PVDV+ TR +N   + G+   Y     CA+     EGP A +KGF P+  R G + V++FV  EQ++
Sbjct:  133 PTEVVKVRMQAQSHLHGIKPR-YTGTYNAYRVIATTESLSTLWKGTTPNLMRNVIINCTELVTYDLMKGALVNHHILADDVPCHLLSALVAGFCTTLLASPVDVVKTRFINS--LPGQ---YPSVPSCAMTMYTKEGPAAFFKGFAPSFLRLGSWNVIMFVCFEQLK 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_BOVIN (Mitochondrial brown fat uncoupling protein 1 (Fragment) OS=Bos taurus GN=UCP1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VR+QA   L   + R Y    +A   +   EG+  LW+G+S  +   +I+  ++L TYD +KE ++K  ++ D +  H  ++  AG   +V S+PVDV+ TR +N         P     +CA+  +  EGP A +KGF+P+  R G +  ++FV  E+++
Sbjct:  115 PTEVVKVRLQAQSHLHGPKPR-YTGTYNAYRIIATTEGLTGLWKGTSPNLTTNVIINCTELVTYDLMKEALVKNKLLADDVPCHFVSAVVAGFCTTVLSSPVDVVKTRFVNSSPGQNTSVP-----NCAMMMLTREGPSAFFKGFVPSFLRLGSWN-IMFVCFERLK 274          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_MOUSE (Mitochondrial brown fat uncoupling protein 1 OS=Mus musculus GN=Ucp1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 51/167 (30.54%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VRMQA   L   + R Y    +A   +   E +++LW+G++  + R +I+  ++L TYD +K  ++   ++ D +  H+ ++  AG   ++ ++PVDV+ TR +N   + G+   Y     CA+     EGP A +KGF+ +  R G + V++FV  EQ++
Sbjct:  133 PTEVVKVRMQAQSHLHGIKPR-YTGTYNAYRVIATTESLSTLWKGTTPNLMRNVIINCTELVTYDLMKGALVNNKILADDVPCHLLSALVAGFCTTLLASPVDVVKTRFINS--LPGQ---YPSVPSCAMSMYTKEGPTAFFKGFVASFLRLGSWNVIMFVCFEQLK 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_OCHDA (Mitochondrial brown fat uncoupling protein 1 OS=Ochotona daurica GN=UCP1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.916e-19
Identity = 49/167 (29.34%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VR+QA   L   + R Y    +A   +   E +++LW+G++  + R +I+  ++L TYD +K  +++  ++ D +  H+ ++  AG   ++ S+PVDV+ TR +N          Y     CA+  +  EGP A +KGF P+  R   + V++FV  E+++
Sbjct:  132 PTEVVKVRLQAQSHLHGLKPR-YTGTYNAYRIIATTESLSTLWKGTTPNLLRNIIINCTELVTYDLMKGALVRNDILADDVPCHLLSALIAGFCTTLLSSPVDVVKTRFIN-----SPQGQYTSVPSCAMSMLTKEGPTAFFKGFAPSFLRLASWNVIMFVCFEKLK 292          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_MESAU (Mitochondrial brown fat uncoupling protein 1 OS=Mesocricetus auratus GN=UCP1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.269e-19
Identity = 50/167 (29.94%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VR+QA   L   + R Y    +A   +   E  ++LW+G++  + R +I+   +L TYD +K  ++   ++ D +  H+ ++F AG   +  ++P DV+ TR +N   + G+   Y     CA+  +  EGP A +KGF+P+  R   + V++FV  EQ++
Sbjct:  133 PTEVVKVRLQAQSHLHGIKPR-YTGTYNAYRIIATTESFSTLWKGTTPNLLRNVIINCVELVTYDLMKGALVNNQILADDVPCHLLSAFVAGFCTTFLASPADVVKTRFINS--LPGQ---YPSVPSCAMTMLTKEGPTAFFKGFVPSFLRLASWNVIMFVCFEQLK 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCPA_DICDI (Mitochondrial substrate carrier family protein ucpA OS=Dictyostelium discoideum GN=ucpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1
Query:   49 NPADVAMVRMQADGRLPS-AQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            +P D+  VRMQA     +  Q   Y S   A  Q++++EG   L RG   +  R  + +A QL+TY   K ++L    + DG+  ++ +S  AG + +   NP DV  TR+            YKG +DC  KTV+ EG  A+YKGF     R GP T++  V  EQ +
Sbjct:  133 SPFDLVKVRMQAANMYKNDPQFVGYSSSFAAFKQIIQKEGFKGLTRGMLTSAQRTAVGSAIQLSTYGSCKNLVLN--FVDDGIYAYIISSMVAGFIVTFGMNPFDVARTRLYFQGKGNSHGEIYKGLMDCVYKTVKKEGFGAVYKGFWAHYLRLGPHTILTLVFWEQFK 299          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_PHOSU (Mitochondrial brown fat uncoupling protein 1 OS=Phodopus sungorus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 49/167 (29.34%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VR+QA   L   + R Y    +A   +   E +++LW+G++  + R +I+  ++L TYD +K  ++   ++ D +  H+ ++  AG   +  ++P DV+ TR +N   + G+   Y     CA+     EGP A +KGF+P+  R   + V++FV  EQ++
Sbjct:  133 PTEVVKVRLQAQSHLHGIKPR-YTGTYNAYRIIATTESLSTLWKGTTPNLLRNVIINCTELVTYDLMKGALVNNQILADDVPCHLLSALVAGFCTTFLASPADVVKTRFINS--LPGQ---YPSVPSCAMTMFTKEGPTAFFKGFVPSFLRLASWNVIMFVCFEQLK 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: UCP1_DICGR (Mitochondrial brown fat uncoupling protein 1 OS=Dicrostonyx groenlandicus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 49/167 (29.34%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 PADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVASNPVDVIMTRVMNMKVVAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            P +V  VR+QA   L   + R Y    +A   +   E  ++LW+G++  + R +I+  ++L TYD +K  ++   ++ D +  H+ ++  AG   +  ++P DV+ TR +N   + G+   Y     CA+  +  EGP A +KGF+P+  R   + V++FV  EQ++
Sbjct:  133 PTEVVKVRLQAQSHLHGIKPR-YTGTYNAYRIIATTESFSTLWKGTTPNLMRNVIINRTELVTYDLMKGALVNNQILADDVPCHLLSALVAGFCTTFLASPADVVKTRFINS--LPGQ---YPSVPSCAMTMLTKEGPTAFFKGFVPSFLRLASWNVIMFVCFEQLK 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: S2534_HUMAN (Solute carrier family 25 member 34 OS=Homo sapiens GN=SLC25A34 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 57/175 (32.57%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   49 NPADVAMVRMQAD--GRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVA----SNPVDVIMTRVMNMKV-VAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            +PA +   ++QA     +    + N+++V+ A+  + RQ+G+  LW+G    V R M+ +A+QLAT+   K  + K+  + +        + A G+++S+A      P DV+ TR+ N  V  AGR   Y G  DC +K  R EGP+ALYKG  P   R GP T++  +  +++R
Sbjct:  122 SPAYLIKTQLQAQTVAAVAVGHQHNHQTVLGALETIWRQQGLLGLWQGVGGAVPRVMVGSAAQLATFASAKAWVQKQQWLPEDSWL---VALAGGMISSIAVVVVMTPFDVVSTRLYNQPVDTAGRGQLYGGLTDCMVKIWRQEGPLALYKGLGPAYLRLGPHTILSMLFWDELR 293          
BLAST of CK934562 vs. ExPASy Swiss-Prot
Match: S2534_BOVIN (Solute carrier family 25 member 34 OS=Bos taurus GN=SLC25A34 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = 1
Query:   49 NPADVAMVRMQAD--GRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASFAAGLVASVA----SNPVDVIMTRVMNMKVV-AGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVR 552
            +PA +   ++QA     +    + +++S++ A+  + RQ+G+A LWRG    V R M+ +A+QLAT+   K  + ++  + +        + A G+++S+A      P DV+ TR+ N  V  AGR   Y G  DC +K  R EGP+ALYKG  P   R GP T++  +  +++R
Sbjct:  122 SPAYLVKTQLQAQTVAAMAVGHQHHHESLLGALETIWRQQGLAGLWRGVGGAVPRVMVGSAAQLATFASAKAWVQERQWLPEDSWL---VALAGGMISSIAVVAVMTPFDVVSTRLYNQPVDGAGRGKLYGGLTDCLVKIWRQEGPLALYKGLGPVYLRLGPHTILSMLFWDELR 293          
The following BLAST results are available for this feature:
BLAST of CK934562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
UCP1_RAT3.861e-2031.14Mitochondrial brown fat uncoupling protein 1 OS=Ra... [more]
UCP1_BOVIN3.861e-2031.74Mitochondrial brown fat uncoupling protein 1 (Frag... [more]
UCP1_MOUSE6.586e-2030.54Mitochondrial brown fat uncoupling protein 1 OS=Mu... [more]
UCP1_OCHDA1.916e-1929.34Mitochondrial brown fat uncoupling protein 1 OS=Oc... [more]
UCP1_MESAU4.269e-1929.94Mitochondrial brown fat uncoupling protein 1 OS=Me... [more]
UCPA_DICDI7.282e-1934.32Mitochondrial substrate carrier family protein ucp... [more]
UCP1_PHOSU9.510e-1929.34Mitochondrial brown fat uncoupling protein 1 OS=Ph... [more]
UCP1_DICGR9.510e-1929.34Mitochondrial brown fat uncoupling protein 1 OS=Di... [more]
S2534_HUMAN9.510e-1932.57Solute carrier family 25 member 34 OS=Homo sapiens... [more]
S2534_BOVIN9.510e-1932.57Solute carrier family 25 member 34 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934562 ID=CK934562; Name=CK934562; organism=Citrus sinensis; type=EST; length=751bp
GGGGTAGCGGCCGGTTTGATCGCCGGAGCAGTTGGGGCCACCGTTGGCAA
CCCCGCTGACGTGGCAATGGTCCGCATGCAAGCCGACGGCCGCCTCCCAT
CGGCTCAGCGGCGTAACTACAAGAGCGTAATCGACGCGATCGCGCAAATG
TTGAGGCAAGAGGGGGTCGCCAGTCTTTGGCGCGGGTCATCGCTGACGGT
GAACCGGGCGATGATCGTGACGGCGTCGCAGCTGGCGACGTACGATCAGG
TGAAGGAGATGATTCTGAAGAAGGGGGTGATGAGGGACGGACTGGGGACG
CACGTGACGGCGAGTTTTGCGGCGGGGCTTGTGGCGTCGGTGGCGTCGAA
TCCGGTGGACGTGATTATGACGAGGGTCATGAATATGAAGGTTGTGGCGG
GGAGGGACCCACCGTATAAGGGGGCCTTAGATTGCGCGCTGAAGACAGTG
AGAGCTGAAGGGCCCATGGCCCTTTATAAAGGGTTCATTCCAACCATTTC
GAGGCAGGGCCCTTTCACTGTAGTGTTGTTTGTGACATTAGAGCAAGTGA
GGAAGCTGCTCAAAGAGTTTTGATTATTTTAGGACGATGATGAATGATGA
TGCAAATTTAATGTTATTATTGTAACTTTTAGCAGTTGTTTTGGTTAGTG
AATGATTTTTTCATTGTTTTGTCACTGAGCTGCAAGGAAGCGGCACAAGC
AAACCTTGGATTTCTTAGCAACTACATAAAACGCGTAAACGAATCTTTTA
T
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