CK934571

Overview
NameCK934571
Unique NameCK934571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 524
            +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A EA RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 524
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A EA +LA   K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  264 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ EA  L    K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  273 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A EA +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  279 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            IYI K++KQ++P   I  K++ I+ S I D    +  EA  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT F S+
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA 103          
The following BLAST results are available for this feature:
BLAST of CK934571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BWT_HUMAN1.357e-1647.67Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BFM_HUMAN4.364e-1545.35Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BV_BOVIN1.270e-1443.96Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE4.825e-1450.00Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI9.099e-1343.02Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934571 ID=CK934571; Name=CK934571; organism=Citrus sinensis; type=EST; length=704bp
GGGGACAACGCCTAGCTTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGA
AAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAAT
GGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGA
AGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCC
GGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCG
CGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGGACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGAC
CTGA
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