CK934571

Overview
NameCK934571
Unique NameCK934571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LAR NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LAR NKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.686e-40
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 3 
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
The following BLAST results are available for this feature:
BLAST of CK934571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_ORYSJ1.759e-4092.39Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI1.759e-4092.39Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT1.759e-4092.39Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B9_ORYSJ3.001e-4091.30Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI3.001e-4091.30Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ORYSJ3.001e-4091.30Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI3.001e-4091.30Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_MAIZE3.001e-4091.30Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B3_MAIZE3.920e-4090.22Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_ARATH6.686e-4091.30Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934571 ID=CK934571; Name=CK934571; organism=Citrus sinensis; type=EST; length=704bp
GGGGACAACGCCTAGCTTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGA
AAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAAT
GGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGA
AGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCC
GGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCG
CGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGGACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGAC
CTGA
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