CK934571

Overview
NameCK934571
Unique NameCK934571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B3_DANRE (Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B2F_HUMAN (Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B2B_MOUSE (Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  267 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA  NK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CK934571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1O_HUMAN4.485e-3683.33Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B1B_HUMAN4.485e-3683.33Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B3_DANRE5.857e-3683.33Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3[more]
H2B2F_HUMAN5.857e-3682.22Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF ... [more]
H2B2B_MOUSE5.857e-3682.22Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb ... [more]
H2B1_PONAB5.857e-3682.22Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_DANRE5.857e-3683.33Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2B1_BOVIN5.857e-3682.22Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1N_HUMAN5.857e-3682.22Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE5.857e-3682.22Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934571 ID=CK934571; Name=CK934571; organism=Citrus sinensis; type=EST; length=704bp
GGGGACAACGCCTAGCTTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGA
AAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAAT
GGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGA
AGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCC
GGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCG
CGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGGACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGAC
CTGA
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