CK934572

Overview
NameCK934572
Unique NameCK934572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROMS (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain AS9601) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROM9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROM2 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROM0 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 361
            K DIHP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNH ++ G +  +  +  +VE+F +K+
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQKIIDTEG-RVERFMRKY 65          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_SYNPW (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROMP (50S ribosomal protein L31 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_PROM5 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_SYNR3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  170 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 364
            K DIHP +Y DAKV CNGE+VMTTG T  E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CK934572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_PROMS3.684e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM93.684e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM23.684e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM03.684e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_TRIEI4.811e-1453.1350S ribosomal protein L31 OS=Trichodesmium erythra... [more]
RL31_PROMT4.811e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNPW8.207e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMP1.072e-1352.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM51.072e-1352.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNR31.400e-1353.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934572 ID=CK934572; Name=CK934572; organism=Citrus sinensis; type=EST; length=615bp
GGGGGCTCACACTCGCCCTCGCAATAAACGCACAGTACGGAAAATGGCGC
AGACTTTGCCCAACACATTCTTCCAAATCAAACCCTCTGCTCCAATTCTC
CCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGAC
CCGGGTGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGG
ATGCAAAGGTGTACTGTAACGGTGAGCTCGTAATGACGACGGGTGGGACC
CAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCT
CGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCC
GTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAA
GGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCTCTAAAGGTGG
CAAGAAGAAGTAGAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGA
ATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGATATTT
GAACGACAAACATTATTATCAAATTATCTTTTTCACGAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
back to top