CK934572

Overview
NameCK934572
Unique NameCK934572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934572 vs. ExPASy Swiss-Prot
Match: RL31_MICAN (50S ribosomal protein L31 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  173 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 361
            K IHP +Y +AKV CNGELVMT G T+ E  V+VWSGNH FY G +  +  +  +V++F +K+
Sbjct:    3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKY 64          
The following BLAST results are available for this feature:
BLAST of CK934572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_MICAN7.681e-1250.7950S ribosomal protein L31 OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934572 ID=CK934572; Name=CK934572; organism=Citrus sinensis; type=EST; length=615bp
GGGGGCTCACACTCGCCCTCGCAATAAACGCACAGTACGGAAAATGGCGC
AGACTTTGCCCAACACATTCTTCCAAATCAAACCCTCTGCTCCAATTCTC
CCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGAC
CCGGGTGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGG
ATGCAAAGGTGTACTGTAACGGTGAGCTCGTAATGACGACGGGTGGGACC
CAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCT
CGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCC
GTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAA
GGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCTCTAAAGGTGG
CAAGAAGAAGTAGAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGA
ATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGATATTT
GAACGACAAACATTATTATCAAATTATCTTTTTCACGAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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