CK934573

Overview
NameCK934573
Unique NameCK934573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  291 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV 503
            RD Y++LGVS+N    +IK AYRK A + HPD+N +D +A + F++++ +Y +LSD +KR  YD  G E V
Sbjct:   23 RDFYKILGVSKNANANQIKKAYRKQAKELHPDRNPDDEMANEKFQDLSAAYEVLSDKEKRAMYDRHGEEGV 93          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP6 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  294 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKLG 590
            D Y++LGV+R+    EIK AYR++A KYHPD N  +P A D FKE+  +Y +LS+P+ R +YD  G   V              G    +F   FS  G
Sbjct:    4 DYYQLLGVARDADKDEIKRAYRRLARKYHPDVN-KEPGAEDKFKEINRAYEVLSEPETRARYDQFGEAGVSGAGAAGFQDFGDMGGFADIFETFFSGFG 101          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_LACJO (Chaperone protein dnaJ OS=Lactobacillus johnsonii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  288 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAG 491
            +RD Y+VLGV +N ++ EI  AYRK+A KYHPD N ++P A + +KEV  +Y +L D  KR QYD  G
Sbjct:    3 QRDYYDVLGVDKNASESEISKAYRKLAKKYHPDLN-HEPGAEEKYKEVNEAYEVLHDKQKRAQYDQFG 69          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_HELHP (Chaperone protein dnaJ OS=Helicobacter hepaticus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  294 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV 503
            D YE+L ++R    + IK AYRKMALKYHPD+N +D  A + FK V  +Y +LSD  KR+ YD  G E +
Sbjct:    5 DYYEILEITRTSDKETIKKAYRKMALKYHPDRNPDDKDAEEQFKRVNEAYEVLSDDSKRQIYDKYGKEGL 74          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEDU (Chaperone protein dnaJ OS=Haemophilus ducreyi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  288 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEA 500
            ++D YEVLG+ +  T+++IK AY+++A KYHPDKN     + + FK++T +Y IL+D  KR  YD  G  A
Sbjct:    3 KKDYYEVLGLQKGATEKDIKRAYKRLAAKYHPDKNQGSKDSEEKFKQITEAYEILTDDQKRAAYDQYGHAA 73          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATU (Chaperone protein dnaJ OS=Francisella tularensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  300 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV 503
            YE+L +S+  +  EIK AYRK+A+KYHPD+N  D  A   FKE++ +Y ILSD  KR +YD  G   V
Sbjct:    7 YEILNISKTASGVEIKRAYRKLAMKYHPDRNPGDKEAEIKFKEISEAYEILSDDSKRSRYDQFGHAGV 74          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATH (Chaperone protein dnaJ OS=Francisella tularensis subsp. holarctica (strain LVS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  300 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV 503
            YE+L +S+  +  EIK AYRK+A+KYHPD+N  D  A   FKE++ +Y ILSD  KR +YD  G   V
Sbjct:    7 YEILNISKTASGVEIKRAYRKLAMKYHPDRNPGDKEAEIKFKEISEAYEILSDDSKRSRYDQFGHAGV 74          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_ERWCT (Chaperone protein dnaJ OS=Erwinia carotovora subsp. atroseptica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  288 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEA 500
            ++D YE LGV+++  D+EIK AY+++A+KYHPD+N  D  A   FKE+  +Y IL D  KR  YD  G  A
Sbjct:    3 KQDYYESLGVAKSADDREIKKAYKRLAMKYHPDRNPGDSEAEAKFKEIKEAYEILIDSQKRAAYDQYGHAA 73          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTFA (Chaperone protein dnaJ OS=Enterococcus faecalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  288 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAG 491
            +RD YEVLG+++  +D EIK AYRK++ KYHPD N  +  A + FKEV+ +Y +LSDP K+  YD  G
Sbjct:    4 KRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDIN-KEADAEEKFKEVSEAYEVLSDPQKKAAYDQYG 70          
BLAST of CK934573 vs. ExPASy Swiss-Prot
Match: DNAJ_COLMA (Chaperone protein dnaJ OS=Colwellia maris GN=dnaJ PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  288 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEA 500
            +RD YE L VS++ +++EIK AY+K+A+KYHPD+   D    + FKEV  +Y IL+D  KR  YD  G  A
Sbjct:    3 KRDYYETLEVSQDASEKEIKKAYKKLAMKYHPDRTQGDKSKEETFKEVKEAYEILNDDQKRAAYDQYGHAA 73          
The following BLAST results are available for this feature:
BLAST of CK934573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJ20_CAEBR2.305e-1246.48DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]
DNAJ_SYNP62.305e-1239.39Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_LACJO2.305e-1251.47Chaperone protein dnaJ OS=Lactobacillus johnsonii ... [more]
DNAJ_HELHP2.305e-1250.00Chaperone protein dnaJ OS=Helicobacter hepaticus G... [more]
DNAJ_HAEDU2.305e-1245.07Chaperone protein dnaJ OS=Haemophilus ducreyi GN=d... [more]
DNAJ_FRATU2.305e-1250.00Chaperone protein dnaJ OS=Francisella tularensis G... [more]
DNAJ_FRATH2.305e-1250.00Chaperone protein dnaJ OS=Francisella tularensis s... [more]
DNAJ_ERWCT2.305e-1247.89Chaperone protein dnaJ OS=Erwinia carotovora subsp... [more]
DNAJ_ENTFA2.305e-1251.47Chaperone protein dnaJ OS=Enterococcus faecalis GN... [more]
DNAJ_COLMA2.305e-1247.89Chaperone protein dnaJ OS=Colwellia maris GN=dnaJ ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934573 ID=CK934573; Name=CK934573; organism=Citrus sinensis; type=EST; length=897bp
GGGGGCTTTTGTCCTCTTCAGCAACAGCTTGGATGTTCCATCAAGTCTAG
TCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATTTTTCCGAGAAA
AGATTAAGAAAAAAAATGCGAGAGAATTTGGGAGGAGTAATTGTTTGTTT
TTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGTGGTTTCTAGGGC
CTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAATGCCGGCTCAACG
ATCCAAGTCCGAGAGAACCGATGCGGGAAAGCAGCTCCGGCGGGATCCCT
ACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAAGAAATCAAGAGC
GCCTACAGGAAAATGGCTCTCAAGTACCATCCTGATAAGAATGCAAATGA
CCCTGTAGCAGCTGATATTTTTAAGGAGGTTACATTTTCCTATAATATCT
TGTCAGATCCTGACAAAAGACGACAGTATGACACTGCTGGTTTTGAGGCT
GTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTCTAGTTTGGGAGC
TGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTGGTGTGCCAATCA
AGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTTAATGGCATGGTT
ACTGTTCGTCCACTACTGTTTGATCAACATATAACCAGGAAGGTTGAAAA
GCAATGTGCTCACTTCTATTCTGTTACAATAACAGAAGAGGAAGCACGGG
CTGGATTCGTGTGCCGAGTGCAATCATCTGACAAAAGCAAATTCAAGTTA
TTGTACTTTGATCGGGAAGGGACTGGTGGACTGAGCCTTGCACTTCANGG
AGATTGCACAAAAACTGGGAAGGGTACATNNNNNGGCATGTATTTTC
back to top