CK934575

Overview
NameCK934575
Unique NameCK934575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_GLUOX (UDP-N-acetylmuramate--L-alanine ligase OS=Gluconobacter oxydans GN=murC PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.109e-12
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A VL+    D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D +  E+A+++ + +F+  I   G  V+C D
Sbjct:  119 KTTTTSLVACVLEHARLDPTVINGGIIEAYGTNTRM-GSGDWMVVEADESDGSFLRLPAVIAVVTNMDPEHLDHWGTEEAMQAGYDQFVSNIPFYGFAVLCVD 220          

HSP 2 Score: 26.5646 bits (57), Expect = 4.109e-12
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  728 DYKIITYGFSSFNDWYAESVCPNVQGGS 811
            D+++ITYGFS   D  AE V  + +G +
Sbjct:  233 DHRVITYGFSPQADIRAEKVVMDKRGAT 260          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_SACEN (UDP-N-acetylmuramate--L-alanine ligase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K++T SML   L+    D +  +G  + +    +  +G G  FV EADE DG FL  +PSVAVVTN++ +H+D     +A   +F+RF+++I  GG L+ C D
Sbjct:  137 KTSTTSMLTVALQHCRLDPSFAIGGDLNE-SGANAHHGDGGVFVAEADESDGSFLVFAPSVAVVTNVEPDHLDHHGTAEAYTEVFQRFVERIEPGGVLIACAD 238          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_RHOPS (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain BisB5) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VAVVTN+D EH+D F+  DAV+  FR F++ +   G  V+C D
Sbjct:  118 KTTTTSMVAALLDAGDVDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADVAVVTNVDPEHLDHFKTFDAVQDAFRIFVENVPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CHLPD (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT +M+A +L   G+  T ++G  V  +  GS   G GK  V+EADE+D  FL L+P++AV+ +L+ EH+D +   + ++  F  F  ++   G ++ C D
Sbjct:  118 KTTTTAMIATMLIEAGESPTVMIGG-VSDYLKGSTVVGSGKYLVIEADEFDRAFLKLTPTIAVINSLESEHMDTYGTIEELRKAFIAFANKVPFYGRVICCVD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ARTS2 (UDP-N-acetylmuramate--L-alanine ligase OS=Arthrobacter sp. (strain FB24) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            KSTT SM+  +L+  G D T  +GA+VP     +   G    FV EADE DG FL   P +AVVTN++ +H+D +   +AV   F  F + +   G LV C D
Sbjct:  127 KSTTTSMVTVLLQGAGLDPTFAIGANVPSLGVNAAS-GTSDIFVAEADESDGSFLNYRPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACAD 228          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_AGRVS (UDP-N-acetylmuramate--L-alanine ligase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L+A   D T I G  +  +   +   G G+  V+EADE DG FL L   VAVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D
Sbjct:  118 KTTTTSMVAALLEAGQLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_GRABC (UDP-N-acetylmuramate--L-alanine ligase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=murC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.333e-12
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A VL+A   D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   +A+++ +++F+  I   G  V+C D
Sbjct:  119 KTTTTSLIAAVLEAAQLDPTVINGGIINAYGTNTRL-GAGEWMVVEADESDGSFLRLPAVIAVVTNMDPEHLDHWGTAEAMEAGYQQFVSNIPFYGFAVLCID 220          

HSP 2 Score: 24.6386 bits (52), Expect = 5.333e-12
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  728 DYKIITYGFSSFNDWYAESV 787
            D++IITYGFS   D  AE +
Sbjct:  233 DHRIITYGFSPQADVRAERI 252          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_GLUDA (UDP-N-acetylmuramate--L-alanine ligase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=murC PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.334e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A VL+A   D T I G  +  +   +   G G   V+EADE DG FL L   + VVTN+D EH+D +   +A+++ + +F+  I   G  V+C D
Sbjct:  119 KTTTTSLIAAVLEAARLDPTVINGGIIEAYGTNTRM-GSGDWMVVEADESDGSFLRLPSVITVVTNMDPEHLDHWGTAEAMQAAYDQFVSNIPFYGFAVLCID 220          

HSP 2 Score: 26.5646 bits (57), Expect = 5.334e-12
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = 2
Query:  728 DYKIITYGFSSFNDWYAESVCPNVQGGS-DYILCERGR 838
            D++I+TYGFS   D  AE V  +  G + + ++  R R
Sbjct:  233 DHRIVTYGFSPQADIRAEKVITDKLGATFEVVVTNRNR 270          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ZYMMO (UDP-N-acetylmuramate--L-alanine ligase OS=Zymomonas mobilis GN=murC PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 5.335e-12
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A G D T I G  +  +   +   G     V+EADE DG FL L  ++A+VTN+D EH+D +   + V+  F  F+  +   G   +C D
Sbjct:  119 KTTTTSMVAALLDAGGIDPTVINGGIINSYGSNARL-GDSDWMVVEADESDGSFLRLDGTLAIVTNIDPEHLDHYGSFEKVQDAFVEFVSNVPFYGAAFLCID 220          

HSP 2 Score: 28.8758 bits (63), Expect = 5.335e-12
Identity = 15/37 (40.54%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  728 DYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGR 838
            D ++ITYGFS+  D  A  + P + GG+ +    RGR
Sbjct:  233 DRRLITYGFSAQADIRAVDITP-ISGGNRFTAVIRGR 268          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_DESVV (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=murC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P V VVTN+D +HVD +  +  +   F  F+ ++   G  V+CGD
Sbjct:  116 KTTTTSLTAAIFDVAGKDPTVIIGGRLNAY-GANARLGEGEYLIAEADESDGSFLCLFPIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVVCGD 217          
The following BLAST results are available for this feature:
BLAST of CK934575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MURC_GLUOX4.109e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Gluconob... [more]
MURC_SACEN4.684e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Saccharo... [more]
MURC_RHOPS4.684e-1243.69UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_CHLPD4.684e-1234.95UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_ARTS24.684e-1240.78UDP-N-acetylmuramate--L-alanine ligase OS=Arthroba... [more]
MURC_AGRVS4.684e-1242.72UDP-N-acetylmuramate--L-alanine ligase OS=Agrobact... [more]
MURC_GRABC5.333e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Granulib... [more]
MURC_GLUDA5.334e-1237.86UDP-N-acetylmuramate--L-alanine ligase OS=Gluconac... [more]
MURC_ZYMMO5.335e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Zymomona... [more]
MURC_DESVV6.118e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934575 ID=CK934575; Name=CK934575; organism=Citrus sinensis; type=EST; length=847bp
GGGGATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCAG
GCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCTC
TCGTTCAAATCTAATCGAACCGCACCTTCTATATTATTATTTATGAAGAA
GAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAAG
AATGCATTGTCGATTTCAAAAATCGAAAGGGGTGGATTCATTTCGTGGGA
ATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAGG
AAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGGA
TGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGAA
GCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATAT
GATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATCT
GGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGTA
TTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCATA
TGTGGGGACAGGTAAGCGCAGTCAAGGTGCACGGTCCTTGCTGGATCAAA
TAAAACAAGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAA
AGTTCAGATCTATGGGGACAAGGGCATGATTACAAAATAATAACTTATGG
TTTTTCAAGTTTTAATGATTGGTACGCTGAATCCGTTTGTCCAAATGTAC
AGGGTGGTAGTGATTATATTTTGTGTGAGAGAGGGCGCCCATTGGCT
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