CK934575

Overview
NameCK934575
Unique NameCK934575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_DESVH (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=murC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P V VVTN+D +HVD +  +  +   F  F+ ++   G  V+CGD
Sbjct:  116 KTTTTSLTAAIFDVAGKDPTVIIGGRLNAY-GANARLGEGEYLIAEADESDGSFLCLFPIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVVCGD 217          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_DESMR (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=murC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S+LA +    G D T I+G  +  +  G+   G G+  + EADE DG FL LSP  +VVTN+D +H+D ++  +A+   F  FL  I   G  V+C D
Sbjct:  116 KTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARL-GQGEYLIAEADESDGSFLCLSPIASVVTNVDADHLDHYDGIEAIDDAFVDFLNNIPFYGVNVVCLD 217          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_DESDA (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=murC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P + VVTN+D +H+D ++  +A+ S F +F+  +   G  ++CGD
Sbjct:  116 KTTTTSLTASIFDEAGLDPTVIIGGRLNVY-GANAHLGHGEYLIAEADESDGSFLCLLPIINVVTNVDEDHLDHYKTREAINSAFVQFMNNVPFYGLNIVCGD 217          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ARTAT (UDP-N-acetylmuramate--L-alanine ligase OS=Arthrobacter aurescens (strain TC1) GN=murC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            KSTT SM+A +LK  G D +  +GA+VP     +  +G    FV EADE DG FL   P +AVVTN++ +H+D +   +AV + F  F   +   G L+ C D
Sbjct:  122 KSTTTSMVAVLLKEAGLDPSFAIGANVPALGVNAA-HGSSDIFVAEADESDGSFLNYRPLIAVVTNVEADHLDHYGTPEAVFASFDDFAALLPAQGVLLACSD 223          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_RHOP5 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain BisA53) GN=murC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  +AV++ FR F++ +   G  V+C D
Sbjct:  118 KTTTTSMVAALLDAGEFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_PARL1 (UDP-N-acetylmuramate--L-alanine ligase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=murC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L   G D T I G  +  +   +   GGG+  V+EADE DG F+ L  ++A+VTN+D EH+D +   DA K  F  F++ +   G  V+C D
Sbjct:  119 KTTTTSLVAAILDKAGLDPTVINGGIINAYGTNARL-GGGEWMVVEADESDGTFVKLPATIAIVTNIDPEHLDYYGSFDAAKDAFLAFVENVPFYGAAVMCID 220          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_METSB (UDP-N-acetylmuramate--L-alanine ligase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=murC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L+A G D T I G  +  +   S   G G   V+EADE DG FL L   VA++TN+D EH+D F   + ++  FR F++ I   G  V+C D
Sbjct:  118 KTTTTSLVATLLEAGGFDPTVINGGIINAYGTNSRL-GAGDWMVVEADESDGTFLKLPADVAIITNIDPEHLDHFGTFENIRKAFRSFVENIPFYGFAVMCLD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_BORGA (UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia garinii GN=murC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT + L  +   +G +   IVG+ V  F D S   G    F++E  EY   FL  SP++ ++TN+D+EHVD F++ +A++  F +++  ++  G L+I  D
Sbjct:  125 KTTTTAFLGILFDKLGLNPNVIVGSSVKDFGDNSAIAGISDIFIVETCEYKKHFLYFSPNMLILTNVDYEHVDFFKNYEALEDAFLQYINNLKKNGILIINSD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ACICJ (UDP-N-acetylmuramate--L-alanine ligase OS=Acidiphilium cryptum (strain JF-5) GN=murC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A VL+  G D T I G  +  +   +   GGG   V+EADE DG FL L   +AVVTN+D EH+D +   +A+++ +R+F+  I   G  V+C D
Sbjct:  119 KTTTTSLVAAVLEGAGLDPTVINGGIINAYGTNARL-GGGDWMVVEADESDGSFLRLPAVIAVVTNMDPEHLDHWGSAEAMEAGYRQFVSNIPFYGFAVLCID 220          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_PARUW (UDP-N-acetylmuramate--L-alanine ligase OS=Protochlamydia amoebophila (strain UWE25) GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  268 ICTRQARSQT-----RKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFED-EDAVKSIFRRFLKQIRVGGHLVICGD 609
            + TRQ +S        K+TT+S+LA  L     D +  VG  +PQF   +  +G G  FV EADE D  FL   P  A+VTN+D +H++ +E+ ED +   F++F  QI    HL  CGD
Sbjct:   97 LLTRQKKSLAVTGTHGKTTTSSLLATTLLEANCDSSFAVGGIIPQFQSNAK-HGLGDLFVFEADESDRSFLKYFPYGAIVTNIDNDHLNSYENSEDVLIQSFQQFTSQISSPNHLFWCGD 215          
The following BLAST results are available for this feature:
BLAST of CK934575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MURC_DESVH6.118e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_DESMR6.118e-1239.81UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_DESDA6.118e-1235.92UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_ARTAT6.118e-1240.78UDP-N-acetylmuramate--L-alanine ligase OS=Arthroba... [more]
MURC_RHOP57.990e-1241.75UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_PARL17.990e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Parvibac... [more]
MURC_METSB7.990e-1240.78UDP-N-acetylmuramate--L-alanine ligase OS=Methyloc... [more]
MURC_BORGA7.990e-1233.98UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia... [more]
MURC_ACICJ7.990e-1240.78UDP-N-acetylmuramate--L-alanine ligase OS=Acidiphi... [more]
MURC_PARUW1.044e-1139.17UDP-N-acetylmuramate--L-alanine ligase OS=Protochl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934575 ID=CK934575; Name=CK934575; organism=Citrus sinensis; type=EST; length=847bp
GGGGATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCAG
GCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCTC
TCGTTCAAATCTAATCGAACCGCACCTTCTATATTATTATTTATGAAGAA
GAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAAG
AATGCATTGTCGATTTCAAAAATCGAAAGGGGTGGATTCATTTCGTGGGA
ATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAGG
AAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGGA
TGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGAA
GCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATAT
GATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATCT
GGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGTA
TTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCATA
TGTGGGGACAGGTAAGCGCAGTCAAGGTGCACGGTCCTTGCTGGATCAAA
TAAAACAAGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAA
AGTTCAGATCTATGGGGACAAGGGCATGATTACAAAATAATAACTTATGG
TTTTTCAAGTTTTAATGATTGGTACGCTGAATCCGTTTGTCCAAATGTAC
AGGGTGGTAGTGATTATATTTTGTGTGAGAGAGGGCGCCCATTGGCT
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