CK934575

Overview
NameCK934575
Unique NameCK934575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:2..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CHLPB (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium phaeobacteroides (strain BS1) GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT +M+A +L   G+  T ++G  +     GS   G GK  V+EADEYD  FL L+PS+AV+ +L+ EH D + D +A++  F  F  ++   G +  C D
Sbjct:  118 KTTTTAMIATMLIGAGESPTVMIGG-ISDDLKGSTMVGSGKYMVIEADEYDRAFLKLTPSLAVINSLEMEHTDTYADIEALRDAFVAFANKVPFYGRVFCCVD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ANASK (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter sp. (strain K) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCID 220          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ANADE (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCID 220          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ANAD2 (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCID 220          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_RHISN (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium sp. (strain NGR234) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCLD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_METRJ (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F   DA+K  FRRF+  I   G  V+C D
Sbjct:  118 KTTTTSLVATLLDAGNLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNIPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CHLTE (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium tepidum GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT +M+A +L   G   T ++G  V  +  GS   G GK+ V+EADEYD  FL L+P++AV+ +L+ EH+D +   D ++  F  F  ++   G ++ C D
Sbjct:  121 KTTTTAMVATMLLEAGQSPTVMIGG-VSDYLKGSTVVGEGKSMVIEADEYDRAFLKLTPTIAVLNSLESEHMDTYGTMDNLRDCFAEFANKVPFYGRVICCVD 222          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CHLAA (UDP-N-acetylmuramate--L-alanine ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 38/122 (31.15%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDR*AQSRCTVLAGSNKTRYW 666
            K+TT ++ A  L+  G     ++GA VP     + +       V+EADEYD  FL L+P++A++TN++W+H D++       + F  F +Q+R    L++C D         LAG ++ R +
Sbjct:  112 KTTTTALTALALRGAGIRCGFLIGADVPALGGSAQWGDPEAPLVIEADEYDRVFLALTPALAIITNVEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCAD---DPGALALAGQSEARLY 230          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_BRASB (UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A G D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D
Sbjct:  118 KTTTTSMVAALLDAGGIDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDAFRAFVENVPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ERYLH (UDP-N-acetylmuramate--L-alanine ligase OS=Erythrobacter litoralis (strain HTCC2594) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.600e-13
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L     D T I G  + Q+   +   G  +  V+EADE DG FL L  ++AVVTN+D EH+D + D D VK  F  F+  +   G  ++C D
Sbjct:  119 KTTTTSMIAALLDCGDIDPTVINGGIIEQYGSNARL-GDSEWMVVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGDFDGVKRAFLDFIHNVPFYGAAILCID 220          

HSP 2 Score: 25.0238 bits (53), Expect = 6.600e-13
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  716 GQGHDYKIITYGFSSFNDWYAESVCPNVQGG-SDYILCERG 835
            GQ  D +++TYGFS   D    ++ P   G   D I+ +RG
Sbjct:  229 GQVRDRRVMTYGFSLQADICGVNIRPEGGGNVFDVIVRQRG 269          
The following BLAST results are available for this feature:
BLAST of CK934575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MURC_CHLPB3.244e-1337.86UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_ANASK4.237e-1340.78UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_ANADE4.237e-1340.78UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_ANAD24.237e-1340.78UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_RHISN5.533e-1342.72UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_METRJ5.533e-1343.69UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_CHLTE5.533e-1336.89UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_CHLAA5.533e-1331.15UDP-N-acetylmuramate--L-alanine ligase OS=Chlorofl... [more]
MURC_BRASB5.533e-1343.69UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhi... [more]
MURC_ERYLH6.600e-1339.81UDP-N-acetylmuramate--L-alanine ligase OS=Erythrob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934575 ID=CK934575; Name=CK934575; organism=Citrus sinensis; type=EST; length=847bp
GGGGATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCAG
GCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCTC
TCGTTCAAATCTAATCGAACCGCACCTTCTATATTATTATTTATGAAGAA
GAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAAG
AATGCATTGTCGATTTCAAAAATCGAAAGGGGTGGATTCATTTCGTGGGA
ATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAGG
AAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGGA
TGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGAA
GCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATAT
GATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATCT
GGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGTA
TTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCATA
TGTGGGGACAGGTAAGCGCAGTCAAGGTGCACGGTCCTTGCTGGATCAAA
TAAAACAAGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAA
AGTTCAGATCTATGGGGACAAGGGCATGATTACAAAATAATAACTTATGG
TTTTTCAAGTTTTAATGATTGGTACGCTGAATCCGTTTGTCCAAATGTAC
AGGGTGGTAGTGATTATATTTTGTGTGAGAGAGGGCGCCCATTGGCT
back to top