CK934575

Overview
NameCK934575
Unique NameCK934575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_MYCSK (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium sp. (strain KMS) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L  +P VAVVTN++ +H+D F   +A  ++F  F++++  GG L+ C D
Sbjct:  126 KTTTTSMLIVALQHCGFDPSFAVGGDLGEAGTNA-HHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTPGGALIACVD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_MYCSJ (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium sp. (strain JLS) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L  +P VAVVTN++ +H+D F   +A  ++F  F++++  GG L+ C D
Sbjct:  126 KTTTTSMLIVALQHCGFDPSFAVGGDLGEAGTNA-HHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTPGGALIACVD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_MYCMM (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAVVTN++ +H+D +   +A   +F  F++++  GG LV+C D
Sbjct:  126 KTTTTSMVIVALQHCGRDPSFAVGGELGEAGTNA-HHGSGDYFVAEADESDGSLLEYTPHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPGGALVVCAD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_METS4 (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium sp. (strain 4-46) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +A+VTN+D EH+D F   DA+K  FR F+  I   G  V+C D
Sbjct:  118 KTTTTSLVATLLDAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDNIPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CALS8 (UDP-N-acetylmuramate--L-alanine ligase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLV 597
            K+TT SM+ Y+LK    + T +VGA V Q   G+   G  +  V+EA EY   FL  +PS+ V+ N+D +H+D F+D +++K  FR+F  +I   G +V
Sbjct:  113 KTTTTSMIGYILKKALLNPTVLVGAFVKQL-GGNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFIV 210          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_AQUAE (UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex aeolicus GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVI 600
            K+TT SM+A +L   G + T I+G  + +    +   G G+  V EADE DG FL L P+VAV+TN+D EH+D +E+ + VK  F +F+  +   G  V+
Sbjct:  117 KTTTTSMIAEILINAGLEPTVIIGGRLKRLGTNAKL-GRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKEAFEQFMNSVPFYGFAVV 215          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_RHIL3 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L+A G D T I G  +  +   +   G G+  V+EADE DG FL L   VAV+TN+D EH+D + + DAV++ FR+F++ +   G  V+C D
Sbjct:  118 KTTTTSLVATLLEAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_RHIEC (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=murC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A +L+A G D T I G  +  +   +   G G+  V+EADE DG FL L   VAV+TN+D EH+D + + DAV++ FR+F++ +   G  V+C D
Sbjct:  118 KTTTTSLVATLLEAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLD 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_NITWN (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D
Sbjct:  118 KTTTTSMVATLLDAGDFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPTDVAIVTNVDAEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMCID 219          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_FLAPJ (UDP-N-acetylmuramate--L-alanine ligase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNF-VLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQI 576
            K+TT+S+L ++L   G D+TA +G  V  +    I  G GK   V+EADE+D  FL L P++A VT++D +H+DI+ D+ A+K+ F+ F  ++
Sbjct:  122 KTTTSSILGHILYESGADVTAFIGGIVENYNSNLI--GSGKTVTVVEADEFDRSFLHLYPNIACVTSMDADHLDIYGDDAAIKASFKEFADKV 212          
The following BLAST results are available for this feature:
BLAST of CK934575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MURC_MYCSK1.233e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCSJ1.233e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCMM1.233e-1237.86UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_METS41.233e-1242.72UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_CALS81.233e-1239.39UDP-N-acetylmuramate--L-alanine ligase OS=Caldicel... [more]
MURC_AQUAE1.233e-1240.00UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex ... [more]
MURC_RHIL31.610e-1241.75UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_RHIEC1.610e-1241.75UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_NITWN1.610e-1242.72UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobac... [more]
MURC_FLAPJ1.610e-1240.86UDP-N-acetylmuramate--L-alanine ligase OS=Flavobac... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934575 ID=CK934575; Name=CK934575; organism=Citrus sinensis; type=EST; length=847bp
GGGGATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCAG
GCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCTC
TCGTTCAAATCTAATCGAACCGCACCTTCTATATTATTATTTATGAAGAA
GAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAAG
AATGCATTGTCGATTTCAAAAATCGAAAGGGGTGGATTCATTTCGTGGGA
ATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAGG
AAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGGA
TGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGAA
GCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATAT
GATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATCT
GGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGTA
TTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCATA
TGTGGGGACAGGTAAGCGCAGTCAAGGTGCACGGTCCTTGCTGGATCAAA
TAAAACAAGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAA
AGTTCAGATCTATGGGGACAAGGGCATGATTACAAAATAATAACTTATGG
TTTTTCAAGTTTTAATGATTGGTACGCTGAATCCGTTTGTCCAAATGTAC
AGGGTGGTAGTGATTATATTTTGTGTGAGAGAGGGCGCCCATTGGCT
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