CK934595

Overview
NameCK934595
Unique NameCK934595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            M  ++ L++AL S+YN E R  +Q +I PSSK+I+  L VMQK GY+GEFEY+DD R GKI+V+L GR+NKCG I+PR+ +  +E   +  +  R LPS++ G I+++T  G+M H+EA R+  GG VLG+ Y
Sbjct:    1 MTVINTLSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 64/130 (49.23%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            M  +  L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V V E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            M  +  L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 63/130 (48.46%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV +  L +AL  + NAE  GK   +I P+SK+I   L VMQ  GY+GEFE+VD+ +AG++ V+L G++NKCGV+ PRF VG  E+E W  R LP+R FG ++LTTS G+M H +A +  +GG++L + Y
Sbjct:    1 MVLMDPLANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 62/130 (47.69%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            M  +  L +AL  + N+E+ GKR++ I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V   E E W  R LP+ +FG ++++TS G+M H+EAR + +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CK934595 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   85 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 474
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
The following BLAST results are available for this feature:
BLAST of CK934595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METS56.757e-3248.8730S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_PYRFU2.568e-3149.2330S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_PYRAB3.353e-3147.6930S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_UNCMA5.720e-3148.4630S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_SULSO5.720e-3148.8730S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_PYRHO7.471e-3147.6930S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_SULIY9.757e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIN9.757e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIM9.757e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIL9.757e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934595 ID=CK934595; Name=CK934595; organism=Citrus sinensis; type=EST; length=707bp
GGGGACTCTCTCCAAACCCTAGCTTTTGCAGCTCACGTACTCTTTCAGAG
GCGCCTCTCCCTGCTTTGATTTGCCTACGCAACAATGGTGAGAGTTAGTG
TTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGGGAAG
CGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTCTTCT
GGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGATGACC
ACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAAATGT
GGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAGGTTG
GACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTGACAA
CTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGTTGGT
GGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAATGGG
ACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGGATTA
GCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGGATTG
GTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTTATCT
CTTAGCAGTTGATTTGGTGATCAATTTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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