CK934597

Overview
NameCK934597
Unique NameCK934597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1764 contig Csv1_Contig1764:65..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.672e-30
Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLPL 917
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF               R    D LQTA+GW +FT GF    + G  +AY LL   N+P+
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIPV 143          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SYNY3 (Photosystem I reaction center subunit XI OS=Synechocystis sp. (strain PCC 6803) GN=psaL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+   GPLR++E             +++ +  L+ YG+ +F              G +   D LQTADGW++F  GFF  G+ G   AYFLL  L++
Sbjct:    6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTFQ-------------GEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSV 147          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFF--CGISG 872
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F +G+ +           +  + LQT   W +F GGFF   CG +G
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQGQTT-----------ENSNDLQTKKAWDQFKGGFFVGACGSAG 135          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_CYAP4 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psaL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.815e-29
Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            ++I+P NGDPF G L TPI+ S     ++ NLPAYR  +SP+LRG+E+G+AHG+ L+GP+VK GPLR++++            ++I + CL  YGI SF + E +  P             L TA+GW++FT GFF     G   A+ LL
Sbjct:    8 ELIKPYNGDPFTGHLSTPISDSDFTRTFIGNLPAYRKGLSPILRGLEIGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILIATACLAAYGIVSFQKEEAAANP-------------LNTAEGWSQFTAGFFVGATGGAFVAFTLL 144          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.397e-28
Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLPL 917
            + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF               R    D LQT++GW +FT GF    + G  +AY LL   N+P+
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RADSKDPLQTSEGWGQFTAGFLVGAVGGSGFAYLLL--ANIPV 143          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.397e-28
Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFF--CGISG 872
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F  G+  T        +    + LQT   W +F GGFF   CG +G
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF--GQEKT--------QSSNENDLQTKKAWDQFKGGFFVGACGSAG 136          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.308e-28
Identity = 63/150 (42.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E             V++ + CL  YG+ SF              G+    D L++A+GW++F  GFF  G+ G   AYFLL
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQ-------------GKAASNDPLKSAEGWSQFAAGFFIGGMGGAFVAYFLL 144          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.933e-28
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFF--CGISG 872
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +              K    +LQT   W +F GGFF   CG +G
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSWDQFKGGFFVGACGSAG 133          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.017e-27
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+ L+GPFV+ GPLRNT+I            +VIL++ + +YG  SF                  +   L++ DGW +   GF    + G  +AY LL
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDIKYLAGLLSAIGLIVILTLGMLLYGAVSFT----------------NDSQDLESVDGWRQLASGFLLGAVGGAGFAYLLL 136          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.665e-27
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            + ++P N DPF+G+L TP+T+S     YL NLP YR  +SPLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF   E                + L++A GW  FT GF      G   AY LL
Sbjct:    3 EFVKPYNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLSPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTEGG--------------ENLESAKGWRNFTSGFSIGAFGGASVAYVLL 138          
The following BLAST results are available for this feature:
BLAST of CK934597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PORPU5.672e-3042.04Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_SYNY31.264e-2941.29Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_ODOSI1.650e-2946.48Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_CYAP42.815e-2941.33Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_PORYE1.397e-2840.76Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_PHATR1.397e-2847.89Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_MICAN5.308e-2842.00Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_THAPS6.933e-2845.77Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_CYAME2.017e-2741.89Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_EMIHU7.665e-2741.33Photosystem I reaction center subunit XI OS=Emilia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934597 ID=CK934597; Name=CK934597; organism=Citrus sinensis; type=EST; length=918bp
NCGGGGAAACAGAAGTCTTTTAACAAACACAANNNCAAATGGCTTCTGTT
TCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTC
CAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTG
TTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAA
AAGGTAACACATTGATGAAATATAAATGTTTATTCGGAATTCATAATCAT
CATCCTTTTCCTTTTTAAGAATGATAGTTATGGTTTTGCTTTTGAAATTG
AAATGGACTCATTAGTTATCAAGGTAGAGTGTTGCGGTTGGCAAGACTTC
TGTTGTTGTGCTTTCAAGATTAAATTAGAAGTATAGAGCAGTTATAAATA
TACCCTTTTTAAGTAATTTGATTTGCACTTTGTGCAGCCAACTTACCAAG
TTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCA
ATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTA
TCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCC
ATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAAC
ACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGT
GATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAATGAAG
GAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAG
CCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATT
CTTCTTTTGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTATG
TCCTTAACCTTCCCTTAC
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