CK934597

Overview
NameCK934597
Unique NameCK934597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1764 contig Csv1_Contig1764:65..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROMA (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus GN=psaL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.076e-20
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTG--RKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            + P++ DP +G+L TP+ S      +L+NLP YR  +SP  RG+EVG A G+LL GP+   GPLRNT+             V IL+  L +Y         P  AP +  +       P  L T  GWA FT GF+  G  G ++A+ L   L+L
Sbjct:   39 VTPVS-DPCVGNLSTPVNSGYFTKAFLNNLPFYRGGLSPNFRGLEVGAAFGYLLYGPYAMTGPLRNTDYALTAGLLGTIGAVHILTALLVLY-------NAPGKAPNIQPSDCTINNPPADLFTRSGWADFTSGFWLGGCGGAVFAWLLCGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROMS (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain AS9601) GN=psaL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  471 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+  L +Y         P  AP +          P  L T  GWA FT GF+  G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLAAIGAVHILTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGSVFAWLLVGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROM2 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9215) GN=psaL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 54/149 (36.24%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  471 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V I++  L +Y         P  AP +          P  L T  GWA FT GF+  G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFAVTAGLLSAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROM0 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9301) GN=psaL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.504e-19
Identity = 54/149 (36.24%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  471 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+    +Y         P  AP +          P  L T  GWA FT GF+  G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLATIGAVHILTALFVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROMP (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psaL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRK--KEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            ++P++ DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V IL+  L +Y         P  AP +          P  L T  GWA FT GF+  G  G ++A+ L+  L+L
Sbjct:   39 VKPVS-DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFSMTGPLRNSDFALTAGLLATIGAVHILTGLLVLY-------NAPGKAPNVQPPDATVYNPPADLFTRTGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROM5 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9515) GN=psaL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 53/149 (35.57%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  471 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V I++  L +Y         P  AP +          P  L T  GWA FT GF+  G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSDFAITAGLLAAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPADLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_GLOVI (Photosystem I reaction center subunit XI OS=Gloeobacter violaceus GN=psaL PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.472e-17
Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  471 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            DP  G+L TP+ +S  I W++ NLP  R  +    RG+E+G+AHG+ L+GPF   GPLRNTE+            ++I +I L+  G AS  E  P      T   RK          GW++  GGF   G+ G I+A+ +L
Sbjct:   11 DPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLS--GYASLVEDVP------TEFDRK----------GWSRLAGGFLVGGVGGAIFAFAIL 134          
The following BLAST results are available for this feature:
BLAST of CK934597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PROMA9.076e-2036.77Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMS2.641e-1936.91Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM22.641e-1936.24Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM04.504e-1936.24Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMP7.683e-1935.48Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM57.683e-1935.57Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_GLOVI2.472e-1736.62Photosystem I reaction center subunit XI OS=Gloeob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934597 ID=CK934597; Name=CK934597; organism=Citrus sinensis; type=EST; length=918bp
NCGGGGAAACAGAAGTCTTTTAACAAACACAANNNCAAATGGCTTCTGTT
TCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTC
CAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTG
TTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAA
AAGGTAACACATTGATGAAATATAAATGTTTATTCGGAATTCATAATCAT
CATCCTTTTCCTTTTTAAGAATGATAGTTATGGTTTTGCTTTTGAAATTG
AAATGGACTCATTAGTTATCAAGGTAGAGTGTTGCGGTTGGCAAGACTTC
TGTTGTTGTGCTTTCAAGATTAAATTAGAAGTATAGAGCAGTTATAAATA
TACCCTTTTTAAGTAATTTGATTTGCACTTTGTGCAGCCAACTTACCAAG
TTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCA
ATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTA
TCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCC
ATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAAC
ACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGT
GATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAATGAAG
GAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAG
CCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATT
CTTCTTTTGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTATG
TCCTTAACCTTCCCTTAC
back to top