CK934640

Overview
NameCK934640
Unique NameCK934640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934640 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.355e-74
Identity = 137/190 (72.11%), Postives = 157/190 (82.63%), Query Frame = 3
Query:  285 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFH 854
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  LLGL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFY 190          
BLAST of CK934640 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.549e-71
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 3
Query:  369 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFH 854
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFH
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFH 162          
BLAST of CK934640 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 111/143 (77.62%), Postives = 122/143 (85.31%), Query Frame = 3
Query:  426 ITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFH 854
            ITHLI CTTS VDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFH
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFH 142          
BLAST of CK934640 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.331e-43
Identity = 87/109 (79.82%), Postives = 93/109 (85.32%), Query Frame = 3
Query:  528 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFH 854
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFH
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFH 109          
BLAST of CK934640 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.053e-22
Identity = 71/255 (27.84%), Postives = 125/255 (49.02%), Query Frame = 3
Query:   78 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSLIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVG 842
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  LLGL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEG 3025          
The following BLAST results are available for this feature:
BLAST of CK934640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY4.355e-7472.11Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA1.549e-7180.86Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA9.748e-5877.62Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.331e-4379.82Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI5.053e-2227.84Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_E11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934640 ID=CK934640; Name=CK934640; organism=Citrus sinensis; type=EST; length=856bp
GGGGACACTCACCAAGCACGAGCCTCAAAACATATTCATTACGGGTTTAA
CTTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGG
CCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCA
ACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCAT
ATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCATTGAT
TAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAATCCCA
ACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTG
GTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAA
AGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCA
CCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTC
GGCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTC
CGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTT
CGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGACACGTCGG
TCGAGCGTCCGTTGTATCAGCTTGTGTCGACTTCGCAGACGATCCTCCCT
GACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTCTCACTTT
CCATTT
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