CK934652

Overview
NameCK934652
Unique NameCK934652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 110/180 (61.11%), Postives = 138/180 (76.67%), Query Frame = 1
Query:  193 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI----KDXMASQ 720
            M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVGNK D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +    KD +A Q
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 110/180 (61.11%), Postives = 138/180 (76.67%), Query Frame = 1
Query:  193 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI----KDXMASQ 720
            M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVGNK D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +    KD +A Q
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.909e-53
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.909e-53
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.909e-53
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.493e-53
Identity = 97/171 (56.73%), Postives = 134/171 (78.36%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDXMAS 717
            YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK D+   +VV+YE  +A A E+G+PF+E+SAK+  NV + F  +A  I++ + S
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD-TRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDS 186          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.493e-53
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.555e-53
Identity = 97/165 (58.79%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+D KI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 97/165 (58.79%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 699
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E  I F ETSAK + N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CK934652 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.111e-52
Identity = 96/171 (56.14%), Postives = 133/171 (77.78%), Query Frame = 1
Query:  205 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDXMAS 717
            YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++ + S
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186          
The following BLAST results are available for this feature:
BLAST of CK934652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB35_MOUSE3.847e-5461.11Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN3.847e-5461.11Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB10_PONAB1.909e-5359.39Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.909e-5359.39Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.909e-5359.39Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
SEC4_CANGA2.493e-5356.73Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB10_CANFA2.493e-5359.39Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK5.555e-5358.79Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB10_DISOM7.255e-5358.79Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
SEC4_YEAST2.111e-5256.14Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_E07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934652 ID=CK934652; Name=CK934652; organism=Citrus sinensis; type=EST; length=728bp
GGGGGGGGATCATTTTTGCCATTGCTTGTCGTTTCAGTATTTTCTTTCTT
TTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCCCG
GCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGGTT
AACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAATCC
TGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGTTG
GCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGAGT
TACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAAGA
TGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAGAT
TTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAATT
GTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTT
GAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGTTG
GAAACAAGTGTGATCTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCC
AAGGCATTTGCAGACGAAATTGGAATACCTTTCATGGAAACTAGTGCAAA
AGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAATCA
AGGATNNNATGGCAAGTCAACCATCCAT
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