CK934661

Overview
NameCK934661
Unique NameCK934661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.648e-16
Identity = 74/254 (29.13%), Postives = 115/254 (45.28%), Query Frame = 2
Query:  161 HHHGKDYVD----PPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 907
            HHH    VD     PP PL+           + + AEF  T   ++  ++T+I  ++     G   LLGIA + G  + VLV     ISG H+NPAV+  + +   +     + Y+ AQ LG+I     VK      Y+ +  G  TV        A   E + TFVL++ + + ATDP      + V  L  + +G  + M  L   P TG  +NPAR+ G A+       +   W++ V   +GA+A   ++
Sbjct:   75 HHHLWHPVDLPKIKPPVPLV-----------KKVGAEFFGTFTLIFTVLSTIIMDEQHK---GVESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGM----YHPVNPGIVTVPK-VGTVEAFFLEFVTTFVLLFIITALATDP------NAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGR---YTQIWVYLVATPLGAVAGEGFY 300          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.764e-16
Identity = 68/235 (28.94%), Postives = 103/235 (43.83%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-KAFMKHEYNSLGGGAN-----TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-------NNDKAWDDHWIFWVGPFVGALAAAAYHQYI 916
            +AEF+ T+L + +    V     +       G + I   +G  + + VY    ISG HINPAVT GL    +    +   Y+ +Q LGA  G  LV   ++ H   +    A      T  +    G+ L  EIIGT VL+  V      K +        L PL +GF V+ + L+    TG  INPAR FG  + +         D  W   W+  +GP +G +  A+ + ++
Sbjct:    5 LAEFLGTMLLIILGDGVVANVVLKKSKGHNSGWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKLA------DGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWVPIIGPIIGGILGASLYNWL 233          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.386e-15
Identity = 66/230 (28.70%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  248 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVGALAA 895
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  H+NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +GA  A
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.386e-15
Identity = 73/255 (28.63%), Postives = 109/255 (42.75%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYI 916
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.386e-15
Identity = 73/255 (28.63%), Postives = 109/255 (42.75%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYI 916
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.386e-15
Identity = 73/255 (28.63%), Postives = 109/255 (42.75%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYI 916
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.088e-15
Identity = 64/230 (27.83%), Postives = 107/230 (46.52%), Query Frame = 2
Query:  236 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 916
            F + L+AE V T   ++   A +  + + +     V L+GIA  +G +I VLVYC   +S  H NPAVT  L  +++  L +  AY+  Q +G+      ++       +      +        GS L A   E I T  L+  V + T  KR+  +     L  L IG  V +  +    ++G  +NPARS G A+++     +   WI+ + P +GA++ A  H+ +
Sbjct:   46 FLQKLLAELVGTYYLIFAGCAAIAVNAQHNHV---VTLVGIAVVWGIVIMVLVYCLGHLSA-HFNPAVTLALASSQRFPLNQVPAYITVQVIGSTLASATLRLLFDLNNDVCSKKHDVFLGSSPSGSDLQAFVMEFIITGFLMLVVCAVTTTKRTTEE-----LEGLIIGATVTLNVIFAGEVSGASMNPARSIGPALVWG---CYKGIWIYLLAPTLGAVSGALIHKML 263          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.033e-15
Identity = 63/204 (30.88%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVA-SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 811
            I EF+ T L ++  V  V    K + A  G+  + I W  G  + + VY TAG+SG H+NPAVT  L+        + + Y+++Q LGA     LV A  ++                E  SL G  +T      + G A   E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   10 IGEFLGTALLIFFGVGCVAA-LKVAGASFGLWEISIMWGMG--VALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRG---PLAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.268e-15
Identity = 73/255 (28.63%), Postives = 110/255 (43.14%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW--IFWVG-------------PFVGALAAA-AYHQYI 916
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W  + + G             P VGA+  A AY + I
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAYRKLI 255          
BLAST of CK934661 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.880e-15
Identity = 65/230 (28.26%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  248 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVGALAA 895
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +GA  A
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
The following BLAST results are available for this feature:
BLAST of CK934661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
NIP32_ORYSJ3.648e-1629.13Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
GLPF_THEMA4.764e-1628.94Probable glycerol uptake facilitator protein OS=Th... [more]
GLPF_STRR61.386e-1528.70Glycerol uptake facilitator protein OS=Streptococc... [more]
GLPF_ECOLI1.386e-1528.63Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL61.386e-1528.63Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO571.386e-1528.63Glycerol uptake facilitator protein OS=Escherichia... [more]
NIP21_ARATH3.088e-1527.83Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]
GLPF_HAEIN4.033e-1530.88Glycerol uptake facilitator protein OS=Haemophilus... [more]
GLPF_SHIFL5.268e-1528.63Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_STRPN6.880e-1528.26Glycerol uptake facilitator protein OS=Streptococc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004228_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934661 ID=CK934661; Name=CK934661; organism=Citrus sinensis; type=EST; length=934bp
GGGGACAGACGCTAGCTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACA
AACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCAC
CACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTC
ATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCAC
TGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTT
TGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGC
ACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCT
GTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGG
CTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATG
AAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGG
CTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGC
TTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGAC
TCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT
GGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTA
GGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGAC
CATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGC
ATACCACCAGTACATCTTGGAGGGCTGCTGCTAT
back to top