CK934669

Overview
NameCK934669
Unique NameCK934669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:99..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.499e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  139 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 429
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K   V+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  G+ KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  139 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 432
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K   V+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  G+ KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  139 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K   V+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  142 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K   V+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CK934669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
THIO_HORSE3.499e-1948.94Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP1.736e-1847.87Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT1.736e-1847.42Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG1.736e-1847.87Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN2.268e-1847.87Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE2.962e-1845.92Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA2.962e-1846.32Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN3.869e-1846.81Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU5.052e-1846.81Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT6.599e-1845.74Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934669 ID=CK934669; Name=CK934669; organism=Citrus sinensis; type=EST; length=672bp
GGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTTATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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