CK934669

Overview
NameCK934669
Unique NameCK934669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:99..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  148 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-YVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 435
            N QL K++   +LVV+DF A+WCGPC+ I+P LAEL+ +    V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  G+  + L+  I  ++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   79 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 429
            P +  M   E  +V    + E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K   V+FL+VD D  + V  + A+  +PTF F K+ + VD++ G+ KE+L+  IA+
Sbjct:  437 PEEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  181 QLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 435
            +LVVVDF A+WCGPC+ IAP + + A++     F K+DVDE+  VA    V +MPT +F K GK V +VVG+    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  184 LVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 432
            LV+VDF A WCGPC+ + P L  LA +LPYV  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  184 LVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 432
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  181 QLVVVDFTASWCGPCRFIAPFLAELAKKLP-YVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 432
            +LVV+DF A WCGPC+ IAP L ELA +    V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  160 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-YVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 435
            Q +  + +LVV+DF A+WCGPC+ I+P L EL+ +    V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  G+  + L+  I  ++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  151 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 435
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP   + +       F+KVDVD+L  +A +  V AMP+F   K G+ ++++VG+   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   79 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 429
            P +AE+   EEG V      E + E L+ + E  +LV VDF+A WCGPCR + P    L+ K   V+FL+VD ++ + +  D  V  +PTF F K  + V +  G+  E+L+++IA+
Sbjct:  434 PFEAEIETLEEGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  118 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 426
            VI   + + W   + KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + G+  + L++ +A
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
The following BLAST results are available for this feature:
BLAST of CK934669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
THIO2_DROYA1.797e-1543.30Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TXND2_HUMAN2.347e-1538.46Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRX2_YEAST2.347e-1545.88Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_CHLMU4.003e-1546.43Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_CHLTR5.228e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIOT_DROME6.829e-1544.71Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO2_DROME8.918e-1540.86Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TRX1_SCHPO1.521e-1438.61Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
TXND2_RAT4.426e-1437.61Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TXL1_SCHPO5.781e-1437.14Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934669 ID=CK934669; Name=CK934669; organism=Citrus sinensis; type=EST; length=672bp
GGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTTATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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