CK934669

Overview
NameCK934669
Unique NameCK934669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:99..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 33/91 (36.26%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  154 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTI 423
            +L +   T + VVVDF A+WCGPC+ + P   E+A+      F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL++ +
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELL 99          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  151 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVG+ +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  190 VVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 435
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK934669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
THIO_MYCGA2.869e-1336.26Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_ECHGR3.747e-1339.56Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_STAAW4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU4.894e-1348.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB4.894e-1348.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934669 ID=CK934669; Name=CK934669; organism=Citrus sinensis; type=EST; length=672bp
GGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTTATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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