CK934669

Overview
NameCK934669
Unique NameCK934669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:99..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  184 LVVVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 435
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  100 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-YVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 435
            A  E QV+      +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+G+  K  L + + K++
Sbjct:   65 AVNEVQVVND---SSWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  172 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-YVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 438
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++G+  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  181 QLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 423
            ++VV+D    WCGPC+ IAP   EL++K   ++FLK+D + + K +A +  +  +PTF  LK+ K+V +V G+K E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   79 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 435
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +    L  +K++ DE  +VA+++ + ++PT M  K GK  + ++G+  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  175 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 435
            ++Q V+VDF A WCGPCR IA  + E+A      L  +KV+ D+  ++AT++ + ++PT M    GK VD VVG+  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  178 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 447
            ++LVV+D    WCGPC+ IAP    L++K   V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V G+K ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  169 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 447
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ G+   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  172 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 447
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of CK934669 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 37/120 (30.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  100 AAEEGQ----VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPYVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 447
            AAE G+    V+   + + + E L+   +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ +
Sbjct:    5 AAEAGEAAVAVVEVGSAQQFEELLRL--KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
The following BLAST results are available for this feature:
BLAST of CK934669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
THIO_LISIN7.066e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
TRXM_PEA9.229e-1237.72Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL1.574e-1137.36Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXF2_ARATH1.574e-1140.24Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE2.056e-1134.96Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO_GRIPA2.685e-1142.70Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH3.507e-1137.36Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
GLRX3_XENTR3.507e-1133.33Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
GLRX3_RAT3.507e-1133.70Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE3.507e-1130.83Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934669 ID=CK934669; Name=CK934669; organism=Citrus sinensis; type=EST; length=672bp
GGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTTATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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