CK934686

Overview
NameCK934686
Unique NameCK934686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934686 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 61/160 (38.12%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  243 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLS 719
            + E LLTPRFYTT+FD+       + + ++ + +F+A+  E + DYN  HF R        +++    + ++  +L RS  +EFSGFLL+KE+  R KK   P + + F  ++RDEARHAGFL + L +    +DL  L K R  TFF   ++ Y+ YLS
Sbjct:   23 LDENLLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKEEGINIDLPNLPKKRAATFFPLSWVLYSLYLS 176          
BLAST of CK934686 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  243 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLS 719
            + E LLTPRFYTT+F++     + EI +K    +FEA+ +E + DYN  HF R K   E  D++    + ++  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L K R  TFF   ++ Y+ YLS
Sbjct:   21 LDENLLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKTEGINVDLPNLPKKRAATFFPLSWVLYSLYLS 174          
BLAST of CK934686 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  243 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLS 719
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R    +  AD +    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLS
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAPTFFPLSWVLYSLYLS 176          
BLAST of CK934686 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  243 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLS 719
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R K   E   ++    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLS
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAATFFPLSWVLYSLYLS 176          
The following BLAST results are available for this feature:
BLAST of CK934686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROM42.805e-2538.13Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMA3.664e-2541.25Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM34.051e-2439.38Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM1.179e-2339.38Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934686 ID=CK934686; Name=CK934686; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTCAGTTACTCTCTAGTTCCTCTCCTGGTTCCAGAAATGGCAGCT
GAGATGGCACTGGTCAAACCGATTAGCAAATTCAGCACCATCGCCACCAC
TACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCA
CAAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCT
GCCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGA
GACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGA
CCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAG
GCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAG
GAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGC
AGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGT
TTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGT
GGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCG
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCT
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