CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE V
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFV 236          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  552 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ G  V + +    +   LPP+ D S+ M+  +EKPD++Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA  T A FIRV+GSE V
Sbjct:  120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFV 232          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE V
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFV 236          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  552 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E G RV ++ + + +Q  L  + D     M V+E P VTY D+GG  +Q+ ++RE VE P+++PEKF  +G++PP GVL +GPPGTGKT+LA+AVAN+TDA FI++ GSELV
Sbjct:  112 LEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELV 223          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 64/155 (41.29%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL + +  + I+ N+     ++     + +VV +   +    ++    V + R+   +   LPP+ D S+ M+   EKPDVTY DVGG   Q +++RE VELP+   + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE V
Sbjct:   87 PLVIGQFMEAIDQNTG----IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFV 237          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  516 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            V+GL D  K+ P D+     VGV+++ Y I   LP   D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +LV
Sbjct:  139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLV 260          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL + +  + I+ N+     ++     + +VV +   +    ++    V + R+   +   LPP+ D S++M+  +E+PDV+Y DVGG   Q +++RE VELP+   + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV+GSE V
Sbjct:   55 PLVIGQFLEAIDQNTA----IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFV 205          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            LPP  D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE V
Sbjct:  143 LPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFV 236          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  570 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            V + R+   +   LPP+ D S+ ++  +EKP  +Y+D+GG   Q ++MRE VELP+ H   + ++GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE V
Sbjct:  115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFV 221          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+ V    +II     D  + I      ++ V +   V    +E G  V +      I   L    DP + +M +++ P  +Y D+GG + QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+RV+GSEL+
Sbjct:  113 PMSVGTLEEII-----DDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELI 262          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS6B_HUMAN1.626e-2658.5126S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_CAEEL1.626e-2649.56Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_BOVIN1.626e-2658.5126S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR1_HALSA2.124e-2650.44Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS6B_ASPNG2.124e-2641.2926S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6A_MOUSE2.124e-2650.3926S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS6B_SCHPO2.774e-2640.0026S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_MOUSE2.774e-2658.5126S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_DICDI4.732e-2651.4026S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS4_SCHPO2.348e-2540.0026S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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