CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  621 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            + PS+      E P VT++DVGG K+  +K+++ VE P+ H   FVK+GI P +G+L +GPPG  KT LA+A AN   A F  +  +EL
Sbjct:  268 VGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAEL 356          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  552 IEEGMRVGVDRNKYQIQIPLPP------KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            I+ G+    + +K+ +++ L         I PS       E P V ++D+GG +E   KM+E+++LP+   E F +LGI  PKGVL YGPPG  KTL A+A+A  +   F+ V G E+
Sbjct:  469 IQRGLGTDANIDKFSLKVTLKDVESAMVDIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEI 586          

HSP 2 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++Y  VGG  ++IE ++  +E+P+  P  F   G+ PP+G+L +GPPGTGKT+L R VAN ++A  + + G  +V
Sbjct:  242 LSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIV 316          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  621 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            IDP    M+V+    V ++ VGG    I+ ++EVV  PML+PE F K  I+PPKGV+ YGPPGTGKTL+ARA+AN
Sbjct:  393 IDP----MSVDSS--VGFDQVGGLSHHIQSLKEVVLFPMLYPEVFAKFKINPPKGVVFYGPPGTGKTLVARALAN 461          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.427e-14
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  525 LGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK--------PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            L D ++   ++   R G D +   +  P+  + D  V++  + ++        P V ++D+GG +E    +R+ ++LP+  PE F + G+ P  GVL YGPPGTGKTLLA+AVA      F+ + G EL+
Sbjct:  597 LPDHMTKAAVDRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELL 725          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  621 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            IDP    M+V+    V ++ VGG    I+ ++EVV  PML+PE F K  I+PPKGV+ YGPPGTGKTL+ARA+AN
Sbjct:  379 IDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALAN 447          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  618 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K+ P+         P+VT++DVG      E++   +  P+ +P+K+  +GID P GVL YGPPG GKTLLA+A+A+   A FI V G EL+
Sbjct:  547 KVVPAAKREGFATIPNVTWDDVGALSGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELL 637          

HSP 2 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            P + ++++GG +  +  +RE +E P+ HPE +  LG++PP+G+L +GP G GKTLLA+A+A         +  +E+
Sbjct:  211 PTINFSNLGGVESCLRDIREHIEYPICHPEIYSHLGVEPPRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEI 286          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++  +T++DV GC E  E+++E+VE  +  P +F KLG   PKG+L  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLPEDQVKITFSDVAGCDEAKEEVQELVEY-LKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  588 KYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            KY+  +   P I P+         PDVT+ +VG  +    ++   +  P+  PE + K+GI  P GVL +GPPG GKTLLA+AVAN + A FI + G EL+
Sbjct:  504 KYEDFLKALPTIQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELL 604          

HSP 2 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+ +   +GG  + + ++ E++ LP+LHPE F+  G++PP+GVL +GPPG GKT +A A+A      FI +    +V
Sbjct:  200 PNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVV 276          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  648 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E K  VT+NDV G  E  E+  EVV   +  PE+F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  164 MEAKTGVTFNDVAGVDEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 243          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S  +  +E K  V +NDV G +E  E+ +EVV   +  PE F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  158 SKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTF-LKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFV 243          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
CD48B_ARATH6.410e-1543.82Cell division control protein 48 homolog B OS=Arab... [more]
AFG2_YEAST6.410e-1537.29ATPase family gene 2 protein OS=Saccharomyces cere... [more]
TBP7_CAEBR2.436e-1454.67TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
PEX6_SCHPO5.427e-1433.85Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
TBP7_CAEEL7.087e-1454.67TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
NVL_DICDI1.209e-1342.86Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
FTSH_BUCBP1.579e-1344.83Cell division protease ftsH OS=Buchnera aphidicola... [more]
RIX7_YEAST2.693e-1340.59Ribosome biogenesis ATPase RIX7 OS=Saccharomyces c... [more]
FTSH_GUITH3.517e-1349.38Cell division protease ftsH homolog OS=Guillardia ... [more]
FSTH_PORYE3.517e-1345.98Cell division protease ftsH homolog OS=Porphyra ye... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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