CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            E   D++ +D+GG  + I ++ E+V +P+ HPE +   GI PP+GVL +GPPG GKT+LA A+AN     FI +    +V
Sbjct:  166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIV 245          

HSP 2 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  618 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K+ PS         P V++N++G  K    +++  +  P+  PE +  +GI  P GVL +GPPG GKTLLA+AVAN + A FI + G EL+
Sbjct:  473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELL 563          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S  +  +E K  V +NDV G +E  E+ +EVV   +  PE F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  158 SKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTF-LKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 243          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            LP  +  S     +E K  VT++DV G  E  +  +E+V+  +  PEKF  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE +
Sbjct:  199 LPFGLGKSKAKFQMEPKTGVTFDDVAGVDEAKQDFQEIVQF-LKFPEKFTAVGARTPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 291          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKGVL  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKGVL  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKGVL  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKGVL  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKGVL  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  663 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 842
            +V ++D+GG    I++++E+V LP+L+PE +    I PP+GVL +GPPGTGKTL+ARA+A
Sbjct:  409 NVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALA 468          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  468 SEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            SE+ K  +N  Q+  F  G   K++P D E  +     RNK+   I  P               PDV + DVGG     +++ + +E+P+ HPE F K G+    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct:  762 SEEQK--VNWDQLLSFNGGR-IKLTPEDFETSINDA--RNKFSDMIGAP-------------RIPDVKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELL 883          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
YB7A_SCHPO4.594e-1342.50Uncharacterized AAA domain-containing protein C16E... [more]
FTSH_PORPU4.594e-1345.98Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH6_ORYSJ6.000e-1342.55Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_SHIFL7.836e-1345.98Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY7.836e-1345.98Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI7.836e-1345.98Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI7.836e-1345.98Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO577.836e-1345.98Cell division protease ftsH OS=Escherichia coli O1... [more]
TBP7_YEAST1.023e-1251.67TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
PEX6_PICAN1.023e-1236.88Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
back to top