CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  642 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            + VE     T+ D GG K+ ++++   V  P+L+PE F K+G+ PP G+L +GPPG GKT LA A+AN     F ++  +E++
Sbjct:  222 LEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVI 304          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  654 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            EKP+V +ND+ G +E  E++ E+V+  + +PE++  LG   PKGVL  GPPGTGKTLLA+AVA      F  + GS  +
Sbjct:  163 EKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 240          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  654 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            EKP+V +ND+ G +E  E++ E+V+  + +PE++  LG   PKGVL  GPPGTGKTLLA+AVA      F  + GS  +
Sbjct:  163 EKPNVRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 240          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKG+L  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLSEDQIQTTFADVAGCDEAKEEVSELVEY-LKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   M  E++   T+ DV GC E  E++ E+VE  +  P +F KLG   PKG+L  GPPGTGKTLLA+A+A      F  + GS+ V
Sbjct:  137 SKARMLSEDQIQTTFADVAGCDEAKEEVSELVEY-LKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 3
Query:  612 PPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P +I  S     +E    VT++DV G  E  +   EVVE  +  PE+F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 290          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +T+ DV G  E  E++ E+VE  + +PEK+V+LG  PP+GVL  G PGTGKTLLA+AVA   +  FI    SE V
Sbjct:  322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 395          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  558 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            E +  G+ R + ++   L   +DP    M +++   V ++ +GG    I  ++E+V  P+L+PE F K  I PP+G L YGPPGTGKTL+ARA+AN
Sbjct:  368 EDLASGILRERVKVGASLAD-VDP----MNIDKS--VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +T+ DV G  E  E++ E+VE  + +P+++V+LG  PP+GVL  G PGTGKTLLA+AVA  +D  FI    SE V
Sbjct:  326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFV 399          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  648 VEEKPD-VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            V E  D VT+ DV G  E  E++ E+VE  + +PE++++LG  PP+GVL  G PGTGKTLLA+AVA   +  FI    SE V
Sbjct:  336 VSESTDIVTFADVAGVDEAKEELEEIVEF-LRNPERYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 416          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
CD48C_ARATH1.023e-1239.76Cell division control protein 48 homolog C OS=Arab... [more]
FTSH_HELPY1.337e-1246.84Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ1.337e-1246.84Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_BUCAP1.337e-1244.83Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI1.337e-1244.83Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH8_ARATH1.337e-1244.09Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH7_ARATH1.337e-1250.67Cell division protease ftsH homolog 7, chloroplast... [more]
ATD2B_HUMAN1.337e-1240.63ATPase family AAA domain-containing protein 2B OS=... [more]
FTSH9_ARATH1.746e-1249.33Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH7_ORYSJ1.746e-1248.78Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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