CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P  T+ DV G  E +E++ E+ +  + +P ++  LG   PKGVL YGPPGTGKTLLARAVA      F  + GS+ V
Sbjct:  155 KDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFV 233          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P  T+ DV G  E +E++ E+ +  + +P ++  LG   PKGVL YGPPGTGKTLLARAVA      F  + GS+ V
Sbjct:  155 KDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFV 233          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P  T+ DV G  E +E++ E+ +  + +P ++  LG   PKGVL YGPPGTGKTLLARAVA      F  + GS+ V
Sbjct:  155 KDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFV 233          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   +  EEK  V + DV G  E+ +++ EVVE  +  P KF +LG   PKGVL  GPPGTGKTLLA+A A      F  + GS+ V
Sbjct:  146 SKAKLYTEEKKRVKFKDVAGADEEKQELVEVVEF-LKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFV 231          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: ATAD2_PONAB (ATPase family AAA domain-containing protein 2 OS=Pongo abelii GN=ATAD2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            V ++ VGG    I  ++E+V  P+L+PE F K  I PP+G L YGPPGTGKTL+ARA+AN
Sbjct:  254 VRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 313          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            V ++ VGG    I  ++E+V  P+L+PE F K  I PP+G L YGPPGTGKTL+ARA+AN
Sbjct:   78 VRFDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 137          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 845
            V ++ VGG    I  ++E+V  P+L+PE F K  I PP+G L YGPPGTGKTL+ARA+AN
Sbjct:  423 VRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 482          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  534 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K +P D+E+ +     RNK+   I  P               P+V + DVGG     +++ + +++PM HPE F   GI    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct:  787 KFTPEDVEKSINTA--RNKFSDSIGAP-------------RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELL 889          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  648 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E K  V ++DV G  E  E+++EVV   +  PEKF  +G   P+GVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  202 MEAKTGVGFDDVAGIDEAKEELQEVVTF-LKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 281          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 3
Query:  612 PPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P +   S     +E    VT++DV G  E  +   EVVE  +  PE+F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 297          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
FTSH_MYCTU2.280e-1245.00Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA2.280e-1245.00Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO2.280e-1245.00Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_BACSU2.280e-1245.98Cell division protease ftsH homolog OS=Bacillus su... [more]
ATAD2_PONAB2.280e-1255.00ATPase family AAA domain-containing protein 2 OS=P... [more]
ATAD2_MOUSE2.280e-1255.00ATPase family AAA domain-containing protein 2 OS=M... [more]
ATAD2_HUMAN2.280e-1255.00ATPase family AAA domain-containing protein 2 OS=H... [more]
PEX6_PICPA2.978e-1236.97Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
FTSH2_SYNY32.978e-1246.91Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH2_ARATH2.978e-1243.01Cell division protease ftsH homolog 2, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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