CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P +T+ DV G  E  E++ E+V+  +  P KF KLG   PKG L  GPPGTGKTLLA+A+A   +  F  + GS+ V
Sbjct:  147 DKGPKITFKDVAGIDEAKEELTEIVDF-LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFV 225          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P +T+ DV G  E  E++ E+V+  +  P KF KLG   PKG L  GPPGTGKTLLA+A+A   +  F  + GS+ V
Sbjct:  147 DKGPKITFKDVAGIDEAKEELTEIVDF-LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFV 225          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            LP  +  S     +E    +T+ DV G  E  +   E+VE  +  PEKF  LG   PKGVL  GPPGTGKTLLA+A+A      F  + GSE +
Sbjct:  202 LPFGLGRSKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 294          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+VT++DVGG     + + E ++LP+  PE F K G+    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct:  989 PNVTWDDVGGLNNVKDAVTETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELL 1064          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P  T+ DV G  E +E++ E+ +  + +P ++  LG   PKGVL YGPPGTGKTLLARAVA      F  + GS+ V
Sbjct:  155 KDMPKTTFADVAGVDEAVEELYEIKDF-LQNPCRYQTLGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFV 233          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  648 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ K  V ++DV G  E  E+++EVV   +  PE+F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  163 MDAKTGVMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 242          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  657 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K  + ++DV G +E  E++ EVV   + +P KF+ +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  148 KTGIMFDDVAGIEEAKEELAEVVAF-LKNPSKFLAVGASIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFV 224          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  648 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E    VT++DV G  E  +   EVVE  +  PE+F  +G   PKGVL  GPPGTGKTLLA+A+A      F  + GSE V
Sbjct:  205 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 284          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  663 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 884
            +VT+  V G +E  ++++EVVE  + +P+KF  LG   PKG+L  GPPGTGKTLLARAVA   D  F    GSE
Sbjct:  277 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSE 349          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  663 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 884
            +VT+  V G +E  ++++EVVE  + +P+KF  LG   PKG+L  GPPGTGKTLLARAVA   D  F    GSE
Sbjct:  277 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSE 349          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
FTSH_RICFE5.079e-1245.00Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN5.079e-1245.00Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH6_ARATH5.079e-1242.55Cell division protease ftsH homolog 6, chloroplast... [more]
PEX6_GLOLA6.634e-1246.75Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
FTSH_MYCLE6.634e-1245.00Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH1_SYNY36.634e-1245.68Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_CYAME8.664e-1246.15Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH2_ORYSJ8.664e-1246.91Cell division protease ftsH homolog 2, chloroplast... [more]
YMEL1_RAT1.132e-1151.35ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
YMEL1_MOUSE1.132e-1151.35ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
back to top