CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+VT++DVGG     + + E ++LP+  PE F K G+    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct:  986 PNVTWDDVGGLGNVKDAITETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELL 1061          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  516 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++GL     P   E+   + ++ N + + +    ++ PS         P+VT+ D+G  ++  +++   +  P+ +P++F  LG+  P G+L  GPPG GKTLLA+AVAN +   FI V G EL+
Sbjct:  530 LLGLLRDQDPLSEEQMQGLCIELNDFIVALA---EVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELL 651          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            ++ P +T+ DV G  E  +++ E+V+  +  P KF KLG   PKG L  GPPGTGKTLLA+A+A   +  F  + GS+ V
Sbjct:  147 DKGPKITFKDVAGIDEAKDELTEIVDF-LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFV 225          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  648 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E K  + + DV G +E  E+++E+V   +    KF  +G   PKGVL  GPPGTGKTLLA+A+A    A F  + GSE V
Sbjct:  162 MEAKTGIVFEDVAGIEEAKEELQEIVAF-LKDSRKFTNVGATIPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFV 241          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  663 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 884
            +VT+  V G +E  ++++EVVE  + +P+KF  LG   PKG+L  GPPGTGKTLLARAVA   D  F    GSE
Sbjct:  335 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSE 407          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 842
            +++  VGG    I +++E+V LP+L+PE F +  + PP+GVL +GPPGTGKTL+ARA+A
Sbjct:  263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 45/138 (32.61%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  480 KYVINVKQIAKFVVGLGDKVSPTDIEE-GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K V++++Q+      + D++ P +I   G  V  D     IQ  L    +   + +   + P+V+++DVGG      ++ + ++LP+ HP  F   GI    G+L +GPPGTGKTLLA+A+A      F+ V G EL+
Sbjct:  863 KRVLSIQQM------MNDEIKPIEIYNCGFLVMGD----DIQKSLSEMQEYQSSSIGAPKIPNVSWDDVGGLANVKSEIMDTIQLPLEHPHLFAS-GIGKRSGILLFGPPGTGKTLLAKAIATECSLNFLSVKGPELI 989          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  654 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 881
            E  DV+++DV GC E  +++ +VVE  + +PEKF ++G   PKGVL  GPPG GKTLLA+AV+      F+   GS
Sbjct:  159 ENTDVSFSDVQGCDEVKKELVDVVEF-LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGS 233          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  555 EEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            EEG   G + NK         K+  +++   + EKP+V + DV G +   E ++E V LP+  P  F K    P  G+L YGPPGTGK+ LA+AVA   ++ F  V  S+LV
Sbjct:  102 EEGEDNGGEDNK---------KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  618 KIDPSV--TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            KI PS   +++ V +   V +  +GG ++   K+++ +E P+  P +FV++G+  PKGVL YGPPG  KT L RA+A      F+ V G++L
Sbjct:  445 KIQPSSFRSVIGVTDIKPVGWEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRCSFVSVSGADL 536          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PEX6_NEUCR1.132e-1146.75Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
NVL_MOUSE1.132e-1132.00Nuclear valosin-containing protein-like OS=Mus mus... [more]
FTSH_RICBR1.132e-1143.75Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_CYACA1.132e-1144.44Cell division protease ftsH homolog OS=Cyanidium c... [more]
YMEL1_HUMAN1.478e-1151.35ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YEJJ_SCHPO1.478e-1150.85Uncharacterized AAA domain-containing protein C31G... [more]
PEX6_DICDI1.478e-1132.61Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
YME1_SCHMA1.930e-1147.37Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
VPS4_YEAST1.930e-1138.39Vacuolar protein sorting-associated protein 4 OS=S... [more]
SPA5L_BOVIN1.930e-1138.04Spermatogenesis-associated protein 5-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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