CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P V+++DVGG +E  +++ E ++LP+ HPE  + LG+    G+L +GPPGTGKTLLA+AVA      F+ V G EL+
Sbjct:  700 PSVSWHDVGGLQEVKKEILETIQLPLEHPE-LLSLGLRR-SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELI 774          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E   V ++DV G +E+ +++ EVVE  +  P++F KLG   P GVL  GPPGTGKTLLA+AVA      F  + GS+ V
Sbjct:  179 KEDIKVRFSDVAGAEEEKQELVEVVEF-LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 257          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +E   V ++DV G +E+ +++ EVVE  +  P++F KLG   P GVL  GPPGTGKTLLA+AVA      F  + GS+ V
Sbjct:  179 KEDIKVRFSDVAGAEEEKQELVEVVEF-LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 257          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  633 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            VT M    K  V + DV GC E  +++ E V   + +P+K+ +LG   PKG L  GPPGTGKTLLA+A A  +   F+ + GS+ +
Sbjct:  321 VTKMDKNSKNKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 405          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  618 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            K+  ++T   + EKP+V ++D+ G +   E ++E V LP+  P+ F   G  P  G+L YGPPGTGK+ LA+AVA    + F  +  S+LV
Sbjct:  110 KLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLV 199          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  630 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            S   + +E +  VT+ DV G ++   ++ EVV+  + + ++F +LG   PKGVL  GPPGTGKTLLA+AVA      F  + GSE V
Sbjct:  146 SKARVQMEPQTQVTFGDVAGIEQAKLELTEVVDF-LKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFV 231          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P V+++DVGG ++  +++ E ++LP+ HPE  + LG+    G+L +GPPGTGKTLLA+AVA      F+ V G EL+
Sbjct:  698 PSVSWHDVGGLQDVKKEILETIQLPLEHPE-LLSLGLRR-SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELI 772          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P V+++DVGG ++  +++ E ++LP+ HPE  + LG+    G+L +GPPGTGKTLLA+AVA      F+ V G EL+
Sbjct:  701 PSVSWHDVGGLQDVKKEILETIQLPLEHPE-LLSLGLRR-SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELI 775          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PDV + D+GG     +++ + +++P+ HPE F   G+    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct:  834 PDVKWEDIGGLDLVKDEIMDTIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELL 909          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  651 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            E K    + DV G  E  E++ EVV+  +  P+K+ ++G   P+GVL  GPPGTGKTLLARAVA      F R+ GS+ +
Sbjct:  133 EGKVTTRFADVAGVDEAKEELMEVVDF-LKFPKKYTEIGGKIPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFI 211          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PEX6_HUMAN1.930e-1146.75Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
FTSH_STRR62.521e-1146.25Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN2.521e-1146.25Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH8_ORYSJ2.521e-1141.86Cell division protease ftsH homolog 8, mitochondri... [more]
VPS4_SCHPO3.292e-1139.56Suppressor protein of bem1/bed5 double mutants OS=... [more]
FTSH4_SYNY33.292e-1142.53Cell division protease ftsH homolog 4 OS=Synechocy... [more]
PEX6_RAT4.300e-1145.45Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_MOUSE4.300e-1145.45Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_DEBHA4.300e-1142.86Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
FTSH_TREPA4.300e-1145.00Cell division protease ftsH homolog OS=Treponema p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
back to top