CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.234e-15
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  331 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            G  GT +EGGYF + +    DYP +PPK  F    +HPNV   +G +CL IL +   W P  T+K  L+ +Q LL  P P++P      Q+++Q+  ++ R  R+    Y
Sbjct:   42 GPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQ--WSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSY 149          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.234e-15
Identity = 56/150 (37.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 666
            RL  E          G  A PE      N+  W+  I G   T +EG  + L+L FS DYP K PK KF    FHPNV   G +CL IL +   W  A  V+ IL+ IQ LL +PN + P      QL+  +  EY++ V    K Y P+
Sbjct:   40 RLQSELMGLMMGADPGISAFPEED----NIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW-SNQEEYRKMVE---KLYKPL 179          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  262 GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            G  A+P+      N   +  +I G   + +EGG F L L+  E+YP   PK +F    +HPNV  SG +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP   D  + +  + A+     R   + Y
Sbjct:   22 GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 52/145 (35.86%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 651
            RL +E +    +   G  A P   DG  NL  W   + G   T +E   + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P       ++  +  EYK+ + ++ K
Sbjct:   34 RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 171          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 636
            +L  WE +I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  D  + + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 636
            +L  WE +I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  D  + + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 636
            +L  WE +I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  D  + + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 636
            +L  WE +I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  D  + + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.750e-15
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV 636
            N+  W   I G   T +EGG+F   + F ++YP+ PP  +F    +HPNVYP G VC+SIL+               W P  TV+ I++ I  +L  PN   PA  +  + + +   E+K++V
Sbjct:   33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKV 155          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.690e-15
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  325 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 639
            I G TGT +EGG F + L   +D+P+ PPK  F    FHPNV  +G +C++ L +D  W+P + +KQ+L+ ++ LL  PNP      +  +L ++   +Y +R +
Sbjct:   50 IEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKD--WKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAK 152          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
UBC1_SCHPO1.234e-1536.36Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC19_ARATH1.234e-1537.33Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2N_MACFA1.612e-1534.09Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2C_SPISO1.612e-1535.86Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2G1_RAT1.612e-1537.90Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.612e-1537.90Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA1.612e-1537.90Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN1.612e-1537.90Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC13_ARATH2.750e-1533.33Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2S_NEMVE4.690e-1536.19Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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