CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+ +W  +I G   T W+GG F LTL F+EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA ++  +++ ++  EY R+VR+  +Q
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPHDN----NITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 61/149 (40.94%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            A+ RL  + K  +K+ P G    P+      N+M W  +I G   T W+GG F LTL+F+EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  +L  IQ LL  PNP  PA  +  +LF ++  EY R+V +  +Q
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDN----NIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV+Q  +Q
Sbjct:    5 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL--QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV    +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV    +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV    +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV    +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++RV    +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            RL +E K   +N P G  A P  +D   +   W+C+I G  GT +EGG +P TL F  DYP  PP  KF   FFHPNVY  GTVC+SIL           +    W P  +V++IL+ +  +L +PN    A  D  +++ +D  EY R VR+ A++
Sbjct:    9 RLMKEYKELTENGPDGITAGPSNED---DFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F EDYP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y +RV++  ++
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEK 147          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
UBC2_WHEAT4.090e-2740.27Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC3_ARATH2.030e-2640.94Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC1_CAEEL3.462e-2643.62Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2B_RAT4.522e-2641.61Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT4.522e-2641.61Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE4.522e-2641.61Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN4.522e-2641.61Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN4.522e-2641.61Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC7_SCHPO2.931e-2538.85Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC2_CANGA2.931e-2540.94Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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