CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 1
Query:  364 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            F L + F  +YP KPP  +F    +HPN+   G VCL +++ +N W+P     Q+L  +  L+ +PN  +P + +   L  QDP  ++++  +   QY
Sbjct:   51 FGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTEN-WKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQY 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  325 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  325 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  325 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 34/115 (29.57%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  301 NLMIWECII-PGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 642
            N+++W  ++ P +     +   F L + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L+++PN  +P + D   L  Q+P  +++   +
Sbjct:   31 NVLVWHALLLPDQPPYHLKA--FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  262 GFVAKPETKDGSVNLMIWECIIPGKT-GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            G  A+P+      N   +  +I G++  + +EGG F   L  +E+YP   PK +F    +HPNV     + L IL +   W PA+ ++ +L+ IQ LL+ PNP DP   D  + +  + A+     R   + Y
Sbjct:   22 GIKAEPDES----NARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDK--WSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLY 148          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 38/118 (32.20%), Postives = 58/118 (49.15%), Query Frame = 1
Query:  289 DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 642
            +G  +LM +E  I    G  +  G F  T   S  YP + PK K     +HPN+   G VCL+IL ED  W+P + +  ++ G+  L  +PN  DP   D   +   +P  ++  VR+
Sbjct:   54 NGKDDLMNFEVSIKPDDGY-YHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED--WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRR 168          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  301 NLMIWE-CIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            +L++W   ++P K    +  G F + + F   YP  PPK  F    +HPNV   G VCL I++ DN W+P    +Q+L  +  ++  P P  P ++D  + F+++  ++ +   +  K+
Sbjct:   31 SLLMWTGLLVPEKA--PYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDN-WKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKK 146          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 1
Query:  349 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 642
            +  G F        +YP +PPK K     +HPN+   G VCL+IL ED  W P + +  I+ G+Q L  +PNP DP   +   +   +  +++  V++
Sbjct:   68 YRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILRED--WNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
UB2L6_RAT1.844e-1131.63Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2K_MOUSE2.409e-1133.93Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.409e-1133.93Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.409e-1133.93Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UB2L6_HUMAN3.146e-1129.57Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UE2NL_HUMAN4.109e-1130.83Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
RCE1_ARATH4.109e-1132.20NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC84_DROME7.008e-1128.57Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC12_DROME7.008e-1131.63NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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